Gene detail

Gene detail information of Glyur000635s00022453

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G66900.1	1.00E-106	Disease resistance protein (CC-NBS-LRR class) family
NR	XP_003629563.1	0	Leucine-rich repeat protein soc-2-like protein [Medicago truncatula]
COG	YP_007098491.1	4.00E-12	Leucine Rich Repeat (LRR)-containing protein [Chamaesiphon minutus PCC 6605]
Swissprot	tr\|Q9FKZ1\|DRL42_ARATH	2.00E-124	Probable disease resistance protein At5g66900
trEMBL	tr\|G7LGB5\|G7LGB5_MEDTR	0	Disease resistance protein (CC-NBS-LRR class) family protein {ECO:0000313\|EMBL:AET04039.1}

Sequence

Transcript Sequence

>Glyur000635s00022453.1
CTCTTGTAGTAAGTACAAATATCTTTCAGTTTCACTAAAGAAAGAAAGGAAGGAACAAAAGGGGGAGGTGGGTCTGAAGTGAATTGGGNAGTCCCGGCGCGTGTCGATTCAAGTTATGGGTGTGGATGGAGGAGGGGCTGTTGTAGGGGCTTTTCTTGGCGTGGTGTTTCAATGGATCGCAAACAAAGGATCCAGGGCCCTGAAGTTCAAAAGCACACGCGGAAAACATGCAACCCTCGGGGAGCGCGTGATCCCGGTGGCGAAGNAGGCGAAGCAATGGGACGAGAAACTGGATCGCCCGGAAGAAGAAACGGGAATTGGGCTAATAGAAGAGCTGGAANAGGGGCAAGAGCTAGTGAAGAAACACTCCAAAGTCCCCTGGTATAAGTTTTGTTGCTTGAGTTGTTACCAGGAGGAGATTCAGGCTAAGGACGANGAAGTGGCCAGGTCCCTTGGCCTTGTCGTCCCAATTACGATATCAAGGGACACTAAAGAGATACTCACGAGAGTGAAAGGCATTGAGGAGAGACAGTTCAACAACGGCCTCTGCAAGCCTCCTGTGAAACCCGATCTCACTGTGGGGTTGNATGTGCATTTGAACCAGTTGAGGAATTGGGTACTCGAGAGTGGTGTGTGCGTACATGTCTTAACTGGCTTGGCTGGGTCCGGGAAGACCACGTTGGCTACATTGCTCTGTTGGGATGAACAAGTCAGAGGTAAATTTGGGGAAAATATTTTGTTCCTCNCTCTGTCCAAAACTCCCGATTTGACGATGATTGTGCAGACACTATTTAAACATCGTGGACTGGCTGAGCCTGAATTCGTAAGCGGTCAGGACCATGCGGTTGTACTGTTGAAAAGATTGATGAAGAAAATTGGGGAAAGTCCAACGATGTTGGTGTTGGATAATGTNTGGNCAGGCTCAGANTCCNTTGTNGAGGAGTTCCNGGTTCAGTCTTCNGATTATAAGATTCTGGTGACTTCCNGGGTTGAGTTTCCGAGGTTTAGTACTTCACGCTTGGANCCGCTTAGCCGTGATGATGATGCGGTTACCCTTTTCCGTAGCTTTGCTCTCCCAAACGACGGAATAAGAAGACCCTACATTCCTCATAAAGAAGTGGTTCAACAGGTAGCAAGGGGTTGTTGGGGCTCTCCACTGGCCCTTAAATTGATTGGTACATCACTCCNTGGACAGCATAGTGAGGCGTGGCAAAAGATGAAGAGATTATTGTCTGAAGGTCGTTCTATTTTGGTTTCTACTAGTGATGATTTGCTTAATCGCCTCCAAAAAGTTTTGGATGATGTATTGGAGGATAAGCCCATCATCAAGGAGTGCTTCATGGACCTAGGATTATTTCCTCAAGACCAAATGGTACCCGTTGCTCCCCTCCTTGACATGTGGACAGAACTGAACCAACTAGACGACGGTGGGATGAACATTGTCCGTGAGCTAAACAACCTGAACTTGGTTAATCTTGTAGTCACAAGTTACTACAACCACCATTTCCTTACTCAGCATGATCTTGTTAAAGAGATAGCTATCCATCAAGCCAGGCAGGAACCATATGAACAAAGGAAAAGGTTGATTTTTGACATAGATGGAAATGATTGGCCTCAACAGAACCAGCAAAATGCCATTGCCCGCACTTTGTCCATAACAACCGACAACATGTTGACCCCAGATTGGAGCAATATTGTAAAAGCTGAAGTAGTTGAGGTTCTGGTCTTAAACCTCCGTACTAATAAGTACGCGTTACCAGAGTTNATAAGGAAAATGAGTAATCTAAAAGTTTTGATAGTCACCAATTACAATNGTTTCCACTTTGCTGAACTAAACAATTTTGAGATACTTGGTTGCCTACCCAACCTGAAAAGAATCAGATTGCAACNGGTTTCAGTTCCTTCCCTTTGCAAATTGAATAATCTGCAAAAGTTGTCCCTTTACATGTGTGAAACGAGTCGGGCTTTCCAAAGTGACACCATTTCAATTTCGGATGCACTGCCAAATCTAGTGGAACTGTGTGTTGATTATTGCAAAGATTTAGTTGAACTTCCTGCAGGGCTCTGTGATATTACTTCCCTCAAGAAGCTCAGTTTCACTAGGTGCATNAGTCTTCTCGCACTGCCCCAAGAAATCGGAAANCTCAAGAACTTGAAGACACTAAGACTTAGTTCCTGTGCTGTGTTGGAAAAGATACCAGCTTCAATTGGAAAGCTTCNTCAGCTACATTTTCTTGATATATCAGGCTGCGTAAGCCTTCACCCTTTACCAGAGGAAGTTGGAAACTTGTGTAATCTAGAAGAGCTTCACATGACTGGTTGCTCAGGNNACACATTGCCAGGGTCTGTCACGAAACTCGAGAGGTTACTGCATTTGATATGTGACGAAGAGACTGCTGAATTTTGGACACNATATTTCAAGCCTAGCCTTCCCAAAGTAGAGATAGAGGAGGCTAAAAATGATAAGTTATTCATCATTGTATGATATATATGATACTTCATGTGTTTGTTCTTTCTTTGATCATGACAATTTCTGTAATGAACTCATTGATTCTCATTTACAATATATTCTTGTGTACGCCTAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00635	78400	82187	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0043531 ADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000635s00022453.1	PF05659.6	RPW8	7	132	1.50E-07
Glyur000635s00022453.1	PF00931.17	NB-ARC	160	431	1.60E-24

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	13.600
SRR1783600	control	13.860
SRR1783602	moderate drought stress	9.275
SRR1811619	moderate drought stress	9.326

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	18.890
DRR006520	Root Summer glycyrrhizin high producing strain	18.447
DRR006521	Root Winter glycyrrhizin high producing strain	4.489
DRR006522	Root Winter glycyrrhizin high producing strain	4.439
DRR006523	Root Summer glycyrrhizin low producing strain	20.753
DRR006524	Root Summer glycyrrhizin low producing strain	20.442
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.005
DRR006526	Leaf Summer glycyrrhizin high producing strain	11.718

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	13.037
SRR2868004	Drought Stress (root)	12.313
SRR2967015	Control (root)	16.743

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	25.952
SRR9715740	Leaf	25.210
SRR9715741	Leaf	29.191
SRR9715739	Root	8.465
SRR9715742	Root	24.631
SRR9715743	Root	21.475

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	42.009
SRR8749028	MeJA induced 9h	48.122
SRR8749029	MeJA induced 9h	38.920
SRR8749030	Uninduced	25.452
SRR8749031	Uninduced	10.634
SRR8749032	Uninduced	8.164

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	15.550
SRR8400027	Control - Root	28.255