Gene detail

Gene detail information of Glyur000635s00022452

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G66900.1	2.00E-131	Disease resistance protein (CC-NBS-LRR class) family
NR	XP_007156839.1	0	hypothetical protein PHAVU_002G021700g [Phaseolus vulgaris]
COG	YP_001278320.1	4.00E-16	NB-ARC domain-containing protein [Roseiflexus sp. RS-1]
Swissprot	tr\|Q9FKZ1\|DRL42_ARATH	9.00E-159	Probable disease resistance protein At5g66900
trEMBL	tr\|V7CHJ8\|V7CHJ8_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW28833.1}

Sequence

Transcript Sequence

>Glyur000635s00022452.1
CAAAACGTTTATTTATTCTAATAGCAAATTTGTAAATTTCCTTTGCACAAGGAACCGTGCTCCTTCCTTTATATATTCCTGTTTGGCCGTTTGCCTGCCCTGGCAACTTCATTGGCTGTTCGAGGTTTTCTAAAAGCTCCAAAAATTATTTATCTTGTGCAAAAGTGGAGCAGTTGCATTTGTGGGGTGTAGCTTTTTCTTCAGTTCAAGTGTGCCTTTCGTTTGTTTAGTTTAGAAAGAAGAAGAAGTAGATAGATCCCACTGAAATTTCTGATTTTGGGTATCTGGGGTGTCTTTATAAACTCGTTAAGAGTTGAGAAAGAAAAGTGTGATGGCTGATTTGTTCAGTGGAGGTGCCGTTGGAGCAGTGATACAAGAGGTTCTGAAATCGGCTCTGGAAGTCATAGACAAAGGTCGAGACTTCAGACCTACCCTTGAAAGCAACATGGAAACCTTGGATGCTTTAACCCCTCTGGTGGAAGAGATCAAACGTTACAGCAACGAATTGGATCGCCCCAAAGAAGAGGTAGCAAGGTTGGAGGATGAAATAAGAGCAGGTAGAGAGCTTGTGAACAAGTGTTCCAAGTTTCGTTGGTGGAGGTTTTTGTCTTTCCCTCAGTACCGTGACAAGCTTCAGAATAGGGACCAGAGGCTTGTGAGGCATTTGTCTGTGGATATGCAAGCACAGGTGGCTAGGGATACAAAAGAGACCCTTTGTAAAGTGAGAGATATTCTTGAGATTCTTGTGAAGGAGTATGTTGGGCTGGGGAACTATGGGAAAGGGGAATTGTTGAGGGGTCTAAGTGGGGCTCCTGAAAACCCTGAATTCACTGTGGGGTTTGATGAGCCTTTGAACAAGTTGAAGATTGAGCTGCTCAAGGATGGACCTGTGTCTATCCTGTTGTTGACTGGTTTGGGAGGATCAGGAAAGAGCACATTAGCCAAGAAGCTCTGTTGGGACAAACAAGTCAAAGGCAAGTTTGGTGGGAACATCTTCTTTGTGGCTGTCTCAAAAACACCCAACTTGAAGACCATTGTCCAGACTTTATTTGAACACTGTGGACGCCGGGTGCCTGAGTTTCGAAGTGATGAAGATGCAATTAACCGGTTGGGGCTTCTGCTGAGGCAAGTTGCGGTTGGGGGAAGTCCAATATTGTTGGTCCTGGATGATGTTTGGCCTGGGTCAGAAACCCTTGTTGAGAAGTTTAAATTCCAGATATCAAATTATAAGATTTTGGTTACTTCGAGAGTTGCGTTTCCAAGATTTGGCAGTCCATACCACTTGAAGCCACTTGATCATGATGATGCGGTATCCCTTTTCCATCACTTCGCTCAACTGAAATTCACCAGCTCATACATGCCTGATAGAGATCTTGTCCAAGAGATAGTGAGAGGTTGTAAGGGTTCACCTTTGGCCCTTGAAGTCATTGGTGGATCTCTCTGTAAGCAGCCTATTGAGGTCTGGCAAATCATGAAGGAACGGCTGAAAAGTCAGTCCATTCTTAAATCTAATAACGACTTACTTAGTCGCCTCCAGAATAGCTTAGATATATTGGAAGATGAGTGCTCCATCAAGGAGAAGGAATGCTTCATGGACCTAGGGCTATTTCCTGAAGACCAAAGGATCCGTGTTCCTTCCCTGATTGACATGTGGGCTGAACTGTATGAACTGGATGAGGATGGCAAGCAAGCAATGACAATAATCCATAATTTAACCAACAAGAATTTGGTTAATGTCATAGATACAAGGAAAGCTGCAATGGACACAGATTTGTACTACAATAACCACTTCCTCACGCAGCATGATCTCCTTAGAGAGCTAGCAATCCACCAGAGCAGCCAAGAACCGTTTGAACAGAGGGAAAGGCTGATTATTGACTTGAGTGGAAATGATCGTCCTGAATGGTGGGTAGGACAGAATCAGCAGGGTATCATTTCTCAAGTATTTTCGTCATTCTTTCCCATAAGGTGGATGATGGATCTGAAGCAAAAACAGGTGGCGGCCCGCACATTGTCTATTTCAACTGATGAAACATTCACTTCAGATTGGTGCAACATGCAGCCTGATGGAGCCGAGGTTCTGATTTTGAATATCCGATCTAGCAAGTACACTTTGCCGGATTTCACCGACAAAATGAGCAAACTCAAAGTTTTGATAGTCACGAATTACGGTTTCCATCCTTCTGAACTAGACAAATTTGAGCTGCTCGGTTGTTTACCTTACTTGAAAAGAATCAGGTTGGAGAAGGTTTCGATTCCTTGCCTATGTAAGTTGAAGAATCTGCAGAAGTTATCCATTTACATGTGCAAAACAAGGCAAGCTCTCAAAAGCAGTTCCATCCAAATCTCGGACGCGCTGCCGAACCTAGTGGAGTTGAACATTGACTATTGCAATGATCTGGTGGAACTGCCTTCTGATATCTGCAAAATCACCACCTTGAAGAAGCTTAGCATTACCAACTGCCACAAGCTTTCTGCACTGCCCCAAGAAATCGGAAAGCTGGAGAACTTGGAAGTGCTAAGGCTTAGTTCCTGCTCTGATTTGCTTGAGTTGCCGGAATCTGTTGGAAGACTTCCTAAGCTGCGCTGTCTTGANGTCTCGGACTGCGTGAACCTCACGCATTTGCCTGAGGACATTGGTGAGTTGGTTAGTCTTGAGAAGCTCTATGTGAGGGGNTGCTCAAAGTTGAGGGAACTGCCACACACTATCATGAACTTTGGGGAATTGAAGCATGCGATACATGTTATCTGCGATGAAGAGGTGGCTGCTTTGTGGGAAAGTTTCTCTAAGCTTACCAATCTGAAGATAGAGATATCCAAAACTGATATTAGCTTGAATTGGCTTCCTGGAGTTCGTGCCAGAGACTAGTTTCGTGGAAGTGACTAAAGTGGCTTGGAGTCATGTGAAATTTGAGACACTGCTCATGTGTTTTACCCTTTTAAGGTTAAATATGTTTTTTTATCTCTTTGGAATTGATAGATTTTGATTTTGATCCATATTTAAATATTATTTNTTTTTAGTTCTTAAAAAATACAAAAGTAATGTGCTTTTAATACTAAAAGCATATTATTTTTGTTAATACTGGAACTAAAAATGAAAAAATTTTAGATAAAGACAAAAAATCAAAATTTGCCAATTTTATAGGGATGGAACATATATTTAATCCTATCTTTTATCATCTTTTTTCATGTAAATAAGCTGGCAGGAAATGTATGAGAATTTAAAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00635	71942	76569	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005515 protein binding

GO:0043531 ADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000635s00022452.1	PF05659.6	RPW8	2	131	2.10E-20
Glyur000635s00022452.1	PF00931.17	NB-ARC	172	443	3.00E-39
Glyur000635s00022452.1	PF00560.28	LRR_1	750	771	1.2
Glyur000635s00022452.1	PF13504.1	LRR_7	774	790	7.8

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	13.160
SRR1783600	control	13.175
SRR1783602	moderate drought stress	21.033
SRR1811619	moderate drought stress	21.016

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	31.171
DRR006520	Root Summer glycyrrhizin high producing strain	30.971
DRR006521	Root Winter glycyrrhizin high producing strain	13.509
DRR006522	Root Winter glycyrrhizin high producing strain	13.174
DRR006523	Root Summer glycyrrhizin low producing strain	55.952
DRR006524	Root Summer glycyrrhizin low producing strain	55.891
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.534
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.464

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	29.137
SRR2868004	Drought Stress (root)	49.375
SRR2967015	Control (root)	42.400

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	37.276
SRR9715740	Leaf	40.199
SRR9715741	Leaf	37.857
SRR9715739	Root	24.058
SRR9715742	Root	57.076
SRR9715743	Root	51.648

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	45.195
SRR8749028	MeJA induced 9h	77.787
SRR8749029	MeJA induced 9h	69.934
SRR8749030	Uninduced	59.506
SRR8749031	Uninduced	109.653
SRR8749032	Uninduced	71.938

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	26.251
SRR8400027	Control - Root	36.208