Gene detail

Gene detail information of Glyur000635s00022451.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G66880.1	7.00E-167	sucrose nonfermenting 1(SNF1)-related protein kinase 2.3
NR	XP_003629567.1	0	Serine/threonine protein kinase SAPK3 [Medicago truncatula]
COG	YP_643511.1	7.00E-25	serine/threonine protein kinase [Rubrobacter xylanophilus DSM 9941]
Swissprot	tr\|Q39193\|SRK2I_ARATH	0	Serine/threonine-protein kinase SRK2I
trEMBL	tr\|G7LGB9\|G7LGB9_MEDTR	0	Uncharacterized protein {ECO:0000313\|EMBL:AFK48751.1}

Sequence

Transcript Sequence

>Glyur000635s00022451.1
GTCCCGGACCATCATGTATAGTGTAAAACATAAATAAAGAACAAAAAAGGGAGAAAGAGAAAGGCGACAACATTGCTGACGAGGCAAACCGCACAATCTGCGTCATCTCGGACACAGAACAAAACGGCGCCGTTTCCCGTCTCGTTCGTTCCACCAATTTGCAGTTGCTTCCGTTCCAACCCAACCCAACCCAATCCAATCCAATAAATACATTTTATCTAATCCCCATTCCCTTTCCCTCACCTACAAACAACAAACCATCACTCGCCAATCCATTTCTCAAAAAGTCTTCTCTTCCTTCCTCGGTTCGTCCTCACTCCCACTCCCTACGCCGCCTCTCGTCGTTTCGCCAGAAACGATGCCGTTTTCCATTCTCTAACTTAAATCGCCGCTCAGGAAACAAAAAAGGATCTGTTAGTTAATAGTGTCTTTTTTTTTTAATTTATTTTTGGGGGTCCGGTTTTTGTGGGATGGATCGGGCGGCGATGACGGTTGGACCGGGNATGGACATGCCGATCATGCACGACAGCGACCGTTACGATCTGGTCCGAGATATCGGGTCCGGGAATTTCGGCGTGGCGAGGCTGATGCAGGACAAGCAGACCAGGGAGCTCGTTGCCGTCAAGTATATCGAACGGGGTGACAAGATTGATGAAAATGTCAAGAGAGAAATCATTAATCACAGGTCTCTGAGACACCCGAACATTGTTAGGTTTAAGGAGGTCATTTTAACACCTACTCATCTTGCCATTGTAATGGAGTATGCATCTGGAGGAGAACTTTTCGAGCGAATCTCCAAAGCTGGGCATTTTACTGAGGACGAGGCTCGTTTCTTCTTTCAACAACTCATATCTGGAGTCAGCTATTGCCATGCAATGCAAGTATGTCACCGGGACCTGAAGTTGGAAAACACTTTGTTGGATGGAAGCCCAACGCCTCGTCTGAAGATATGTGATTTTGGGTACTCCAAGACTCTGATGATGATGGAACTGGGTAGCTCCAAAAGTTATGAAATGTCTTCAGTGCTTCATTCACAACCAAAGTCAACTGTGGGAACTCCTGCATATATTGCTCCAGAAGTATTACTGAGACAAGAGTATGATGGCAAGATTGCAGATGTCTGGTCATGTGGAGTAACCTTATACGTGATGCTAGTGGGAGCATATCCTTTTGAAGATCCTGATGAACCTAAGGATTTCCGGAAGACAATACAGAGAGTACTCAGTGTCCAGTATTCGATTCCAGACGTTGTTCAAATATCTCCAGAATGTCGCCACCTTATCTCAAGGATATTTGTTTTTGACCCTGCAGAGAGAATTACCATGCCTGAAATCTGGAAACACGAATGGTTTCTGAAGAATCTCCCGGCGGACCTGATGGATGAGAAGATAATGGGGAACCAATTCGAAGAGCCAGAGCAACCCATGCAGAGCATTGACACNATCATGCAGATAATTTCAGAAGCTACCATACCAGCAGCTGGGACCTGTTCTTTAGACCAGTTTATGTCAGACAACATCGATATGGATGACGACATCGACGANATGGACTCTGAATCAGAGCTTGATATAGATAGCAGTGGGGAGATAGTGTATGCCATATACTAATATTATCATCATCGTCGGTACTTGAAAGATAGCATGTTAAAAGGAGAGCATCATAGTATTGTGCTTTATGGCGTTTTCAGCATCCCGGAAAGAGAAGTATATGTGGTGCCCGCATTTTGTGTATAGATTAGCATGCATAAAATACAAAGAAGTTCATGTTAATTTATATGTTTGCGTGCTTCTTGGAGGTTCCGATGTCCATACCATTTATGAGTATCACCTTTCTAGAGAAGGGGGAGGGACATGTTTTCTTCATCCTAAAGGGTTGCTGGATGAGGGAAAGAAGTGATGTTTATCCTTTCCTCATTTCCTGGTGAATACTTGCTTTATATATTAGTCTTTTTGTTGTTTCCCGGCCAGGTTGAATTGGCCGTTAGGTGAATCATATTTCATGCCCATATGCATATGTGCACATACTCCATGTAAAACAGTTAATTTTCATTAGACATAATCGTTACATTTGCTAGTTTATATAATACTTAGTTCGTGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00635	66119	71012	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:4.2.4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K14498	SNRK2	EC:2.7.11.1	MAPK signaling pathway - plant	map04016
			Plant hormone signal transduction	map04075

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000635s00022451.1	PF00069.20	Pkinase	23	294	9.50E-70

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	79.069
SRR1783600	control	79.606
SRR1783602	moderate drought stress	133.083
SRR1811619	moderate drought stress	133.038

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	146.119
DRR006520	Root Summer glycyrrhizin high producing strain	143.819
DRR006521	Root Winter glycyrrhizin high producing strain	68.070
DRR006522	Root Winter glycyrrhizin high producing strain	66.362
DRR006523	Root Summer glycyrrhizin low producing strain	161.780
DRR006524	Root Summer glycyrrhizin low producing strain	161.629
DRR006525	Leaf Summer glycyrrhizin high producing strain	59.271
DRR006526	Leaf Summer glycyrrhizin high producing strain	59.137

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	108.616
SRR2868004	Drought Stress (root)	139.199
SRR2967015	Control (root)	136.124

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	71.535
SRR9715740	Leaf	89.559
SRR9715741	Leaf	108.595
SRR9715739	Root	60.587
SRR9715742	Root	78.552
SRR9715743	Root	73.191

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	74.031
SRR8749028	MeJA induced 9h	77.159
SRR8749029	MeJA induced 9h	63.787
SRR8749030	Uninduced	51.268
SRR8749031	Uninduced	74.979
SRR8749032	Uninduced	59.583

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	107.409
SRR8400027	Control - Root	95.474