Gene detail

Gene detail information of Glyur000635s00022449

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G37180.1	2.00E-41	Homeodomain-like superfamily protein
NR	XP_007155959.1	5.28E-127	hypothetical protein PHAVU_003G246900g [Phaseolus vulgaris]
Swissprot	tr\|Q9LTH4\|PCLL_ARATH	2.00E-15	Transcription factor BOA
trEMBL	tr\|V7CF13\|V7CF13_PHAVU	2.00E-127	Uncharacterized protein {ECO:0000313\|EMBL:ESW27953.1}

Sequence

Transcript Sequence

>Glyur000635s00022449.1
ATGGAACTGAGCTTGGATTTGAGTTTGGCCTTTATCGTTCCCAGAAGTACGGTTTCTGAGCTCCTCGGCGAGGCTTCTCAGAGCAAAGACGATGATGGGTCTCAGAAAATGACCACGCGGCATGAGGACTTGGTCAAAAGGTTGGAAGATGAGATGAGAAAAATCGAAGCTTTCAAACGCGAGCTTCCACTTTGCATGACACTCGTAAACGATGGNGAACTGAAGGAGGAAAGAGACAAGTGTACGAGAGTGCAAGATGAACCCGTGGTTGAAGAATCATTGCCAGTGGTAAAATTGGGAACCAGTTGTGGAGGAAATGGGTCAATGATGACTATAGGGAAAGGAAGCAGTGACAAGAAGANTTGGATGAGCTCTGCTCAGCTATGGAACGCTGAAACCGAATCGAGGAATGCAGAGGATGATAGGTGTGTACCCCACAACCCAATTCATCAACCACCACGGAAAGAGACCAACAACAGTGGAGGACCATTTCTTGCATTCATTGGAAACTCGGGTGTCTCAAAGACAGTGATGATGAGGGAAAGGGAAGACAAAGAGGTTTCAGAAGTTCCTAGCCTTGGTTTGATGACTCTTCCAGCTTCTGATCTGAATCGTGGAAGTTCCAGAAGCCNGGTTGAGATTAAGGGTCAACCACAACCGCGGCAGAATAATAATCCGAGGAAACAAAGGAGATGCTGGTCGCCAGAGCTTCATCGGCGATTTGTTGATGCCCTTCAACAATTGGGAGGACCACAAGTGGCCACACCTAAGCAGATTAGAGAACTGATGCAAGTGGAAGGCCTAACAAACGATGAAGTGAAAAGCCATTTGCAAAAGTACAGGCTTCATTTTAGGAGAATTCCAATTTCTCCAAATGGCCAGGCAAATAATGGTGGCATATTGATGGCACAAGATGAATGTGGAGATAAAAATAATAATAATAAATTAAAGGGGACCATATCATCACAATCTGGGTCTCCACAGGGTCCCCTCTTCCTAAGAGGGTCATCTGGTAAAGGCATTTCAAGTGCTTCAGGACGCAACAGTATGGACACAGAAGAAGAAGATGAGCAATCAGATTGCCACAGTTGGAAAGGTGNGCTTCACCACCCACCACTAGAAGCTGGCGTATTGTGAGCCGCTAAAATGATTTTCATATAAAGTAAAGACATTTATAAATGAGAAGACCCAGAATTTGACAGCATAATAAAAATAATAATAGATCTAACACGGATAGATACAATTACAAGGGATCCAATATCCAAATCGGTGTCATAAATTAAATGAGAGAGACTTCTTGAGTGAACGGTCCAGATTTTGCCGAGTTTCAGAGTTTTTCTTCCCTCTGTTTTTAATAAGGAGGCTTTTGTGTCATGACCAGTACTATAAATTGTTGGTAGCTACTGTAGTTTTTTTATTTGAGAAATTCTCAGCGTGTAACTCTCTTTTGGCGTTTTGGCCTTTTCTGCTCCGGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00635	57343	59490	-

Gene family

Gene family	subfamily
Transcription Factors Family	G2-like
EAR motif-containing Proteins	G2-like

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003677 DNA binding

GO:0003682 chromatin binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000635s00022449.1	PF00249.26	Myb_DNA-binding	230	281	1.80E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	26.242
SRR1783600	control	26.817
SRR1783602	moderate drought stress	36.499
SRR1811619	moderate drought stress	36.942

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	32.370
DRR006520	Root Summer glycyrrhizin high producing strain	31.424
DRR006521	Root Winter glycyrrhizin high producing strain	3.545
DRR006522	Root Winter glycyrrhizin high producing strain	3.390
DRR006523	Root Summer glycyrrhizin low producing strain	16.170
DRR006524	Root Summer glycyrrhizin low producing strain	17.832
DRR006525	Leaf Summer glycyrrhizin high producing strain	17.054
DRR006526	Leaf Summer glycyrrhizin high producing strain	16.671

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.389
SRR2868004	Drought Stress (root)	5.843
SRR2967015	Control (root)	3.762

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	22.334
SRR9715740	Leaf	37.054
SRR9715741	Leaf	11.709
SRR9715739	Root	9.096
SRR9715742	Root	29.537
SRR9715743	Root	25.452

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.048
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.062
SRR8749030	Uninduced	0.208
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.038

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	20.335
SRR8400027	Control - Root	11.919