Gene detail

Gene detail information of Glyur000635s00022447

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G66860.1	2.00E-84	Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain
NR	XP_004509151.1	3.60E-153	PREDICTED: 50S ribosomal protein L25-like [Cicer arietinum]
COG	YP_002361943.1	7.00E-14	50S ribosomal protein L25/general stress protein Ctc [Methylocella silvestris BL2]
trEMBL	tr\|I1K1R5\|I1K1R5_SOYBN	9.00E-149	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA05G09970.1}

Sequence

Transcript Sequence

>Glyur000635s00022447.1
AAAAGACAAAATGAGGAAGCCCAAATAGGCCCAGAACCTAAAACCCTTTATTCTCAAAACCCCATTCTGCGTTGCAGAGAGGAGCAGAGAAAAACAATCATGGCGCAGTGGTGGCGCTCCGCCGCCGGCCACCTTCAAACGGTGTCGGCGAGCCGTTTATCCCTATCAGGTCTCCGGCGCAGTCAGTACCACACAATCCAAGCCACCCCTAGAGAGTGCAGTGGAAGCAGAGTCTCCACCAGGGACAGAATGCAAGGTCGAATACCAGCCATCGTTTTCTTCCAGAACCTTCTGGACAAAAACCCCGCCGCCCGATCGGCGTCGCGGAAGCATTTGCTCACCGTCGAGAAGAAGCAGATTAAAGCCGTACTCAACTCCGTTGGAGATCCTTTCTTCTGCACCACCCGTTTTCCACTCCAGATCCGTGCCGGATCCGGTTCCTCTCATCTGGTCGAAAGCGGAACTGTGCTACCTATCAAGAGAGTAGCAGAGAAAACAATCATGGCGCAGTGGTGGCGCTCCGCCGCCGGCCACCTTCAAACGGTGTCGGCGAGCCGTTTATCCCTATCAGGTCTCCGGCGCAGTCAGTACCACACAATCCAAGCCACCCCTAGAGAGTGCAGTGGAAGCAGAGTCTCCACCAGGGACAGAATGCAAGGTCGAATACCAGCCATCGTTTTCTTCCAGAACCTTCTGGACAAAAACCCCGCCGCCCGATCGGCGTCGCGGAAGCATTTGCTCACCGTCGAGAAGAAGCAGATTAAAGCCGTACTCAACTCCGTTGGAGATCCTTTCTTCTGCACCACCCGTTTTCCACTCCAGATCCGTGCCGGATCCGGTTCCTCTCATCTGGTCGAAAGCGGAACTGTGCTACCTATCAAGATTCATAGGNACGAAGAGAGTGGGAGTATTTTGAATTTGGTGTTTGTCTGGGCTGAAGATGGAGCTGAATTGAAGGTAGATGTGCCTGTTGTTTTCAAAGGGGAAGAAGCTTGTCCTGGTCTCCAGAAAGGTGGTGTTTTGAATAAGATCAGAGCTAGTTTAAAATATCTTTGTCCATCTGAGCACATTCCTTCAAAAATTGAGGTGGATGTAAGCAATCTAGATATTGAAGATAGGATATTCATGCGTGATATTGAGGTTCATCCATCCTTGAAACTTCTGAGTAAGAATGAAAACATGCCCATATGTAAAATAGTTCCAACAAGTTTGGGAAACCAAGCACCAGTTGACGAGTGAACACTGAAGNAACATATTATACTCTGACAAAGTGCATTTATCGGGAGAAATGCAGAGGCTCCAAAATAAACAAGGTAGACACCCTGATTTGATGAAATGTTGGCAGTGACGAGTACAAGCACGGACCTGAGATGTTAGAACTGTTTTGTGTTNGACTTTATTGGAGTTTCAATATAGATGGCTGTTGATTTATAATGGATTGATGATTTCCATTCAATC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00635	40966	46863	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006412 translation

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000635s00022447.1	PF14693.1	Ribosomal_TL5_C	284	368	6.00E-18
Glyur000635s00022447.2	PF14693.1	Ribosomal_TL5_C	150	234	2.60E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	28.459
SRR1783600	control	27.415
SRR1783602	moderate drought stress	17.783
SRR1811619	moderate drought stress	18.547

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	35.380
DRR006520	Root Summer glycyrrhizin high producing strain	35.830
DRR006521	Root Winter glycyrrhizin high producing strain	31.255
DRR006522	Root Winter glycyrrhizin high producing strain	29.727
DRR006523	Root Summer glycyrrhizin low producing strain	36.931
DRR006524	Root Summer glycyrrhizin low producing strain	35.747
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.480
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.359

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	29.532
SRR2868004	Drought Stress (root)	13.359
SRR2967015	Control (root)	15.141

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.331
SRR9715740	Leaf	17.694
SRR9715741	Leaf	10.514
SRR9715739	Root	15.745
SRR9715742	Root	23.144
SRR9715743	Root	24.589

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	65.707
SRR8749028	MeJA induced 9h	27.860
SRR8749029	MeJA induced 9h	52.561
SRR8749030	Uninduced	3.703
SRR8749031	Uninduced	3.687
SRR8749032	Uninduced	7.380

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	33.452
SRR8400027	Control - Root	27.290