Gene detail

Gene detail information of Glyur000635s00022444

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G15790.1	1.00E-161	peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase
NR	XP_003524582.1	0	PREDICTED: peptidyl-prolyl cis-trans isomerase CYP40-like isoform X1 [Glycine max]
COG	YP_007069501.1	1.00E-65	cyclophilin type peptidyl-prolyl cis-trans isomerase [Leptolyngbya sp. PCC 7376]
Swissprot	tr\|Q9C566\|CYP40_ARATH	0	Peptidyl-prolyl cis-trans isomerase CYP40
trEMBL	tr\|I1K1S1\|I1K1S1_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA05G10100.1}

Sequence

Transcript Sequence

>Glyur000635s00022444.1
GGATTAGGGTTTTGGAGCGTAGTTCGTTTAGTTTGCCTCTCCATTCTNCTCTCAGTGAGTCTCAGTGAGAAAAAAATGGTGAACCCAAGGTGCTTCCTCGACGTCAGCATCGGTGGAGAGTTAGAAGGTAGAATCGTCATTGAGCTCTTCAGGGACGCCGTTCCCAAAACCGCCGAGAATTTCAGAGCTCTCTGCACCGGCGAAAAGGGCATCGGTCCCAACACCGGCGTTCCCCTCCACTACAAGGGTGTGTGTTTCCATCGCGTGATCAAAGGGTTCATGATTCAAGGCGGAGACATCTCCGCCGGTAACGGAACCGGAGGGGAATCCATCTACGGTTCGAAGTTCGAGGACGAGAGCTTCGAGCTGAAGCACGAGAGGAAAGGGATGCTATCCATGGCGAACTCGGGTCCTGACACCAACGGCTCTCAGTTCTTCATCACAACCACTCGTACCCCTCACTTGGATGGAAANCACGTCGTGTTCGGGAGGGTCCTCAAAGGAATGGGCGTGGTTCGTTCCGCCGAACACGTCCCCACTGTGGAGGACGATCGTCCTTCTCAGGATGTTGTTATTGTTGATTGTGGGGAAATTCCCCAAGGGGAGGATGATGGAGTCAGTAACTTTTTCAAAGATGGTGATAGTTTTCCTGATTGGCCGGCCGATCTCGACACGAAACCTGAGGAGATTTCGTGGTGGATGAGTGCTGTGGACTCTATCAAAAGTTTCGGGAATGAACACTATAAGAAGCAAGATTATAAGATGGCTGTCAGAAAGTATCGCAAGGCCTTGCGCTATTTGGACATGTGTTGGGAGAAGGACGGCATTGACCAAGAGAAGAGTGACGCTTTAAGGAAGACAAAATCTCAAATCTTTACAAACAGTTCAGCTTGTAAGTTGAAACTAGGTGATCCTAAAGGAGCTGTACTGGATTCAGACTTTGCAATGCATGATGGAGATAATGCAAAAGCTCTCTTTCGCAAAGGCCAGGCATATATGGCACTTAACGACCTAGATGCTGCTGTTGAAAACTTCAAGAAAGCATTAGAAATGGAGCCAAACGATGGAGGGATAAAAAAGGAGTATGCAGCTGCCAGGAAGAAGGTTGCTGATAGACGTGATCAAGAGAAAAAAGCTTATTCTAAGATGTTCAAATAGGGTTCTTGCAGTTATGGTGCTTGCGGCTGTATGGTCTGAAAAATCAGATTTTTGAGGGGAGCATGTCTGATTACATAGTCAACATTTTCTGATTTTCCTTTGCTGGTAGTCTATGAAAACATCAGATATAGTGTATGTTNTTGAATTTACGCTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00635	23325	25862	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0000413 protein peptidyl-prolyl isomerization

GO:0006457 protein folding

molecular_function

GO:0003755 peptidyl-prolyl cis-trans isomerase activity

GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000635s00022444.1	PF00160.16	Pro_isomerase	8	171	9.40E-48
Glyur000635s00022444.1	PF07719.12	TPR_2	219	241	0.033
Glyur000635s00022444.1	PF00515.23	TPR_1	297	330	1.00E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	19.169
SRR1783600	control	19.273
SRR1783602	moderate drought stress	18.786
SRR1811619	moderate drought stress	18.382

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	21.197
DRR006520	Root Summer glycyrrhizin high producing strain	21.138
DRR006521	Root Winter glycyrrhizin high producing strain	4.707
DRR006522	Root Winter glycyrrhizin high producing strain	4.623
DRR006523	Root Summer glycyrrhizin low producing strain	12.517
DRR006524	Root Summer glycyrrhizin low producing strain	12.928
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.392
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.410

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	34.618
SRR2868004	Drought Stress (root)	18.561
SRR2967015	Control (root)	16.519

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.974
SRR9715740	Leaf	2.787
SRR9715741	Leaf	4.067
SRR9715739	Root	6.479
SRR9715742	Root	10.146
SRR9715743	Root	9.757

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	111.354
SRR8749028	MeJA induced 9h	37.476
SRR8749029	MeJA induced 9h	69.439
SRR8749030	Uninduced	10.069
SRR8749031	Uninduced	8.437
SRR8749032	Uninduced	10.839

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	34.431
SRR8400027	Control - Root	22.642