Gene detail

Gene detail information of Glyur000634s00028961

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G21680.1	0	DPP6 N-terminal domain-like protein
NR	XP_004502520.1	0	PREDICTED: uncharacterized protein LOC101497096 [Cicer arietinum]
COG	YP_828764.1	3.00E-26	hypothetical protein Acid_7571 [Candidatus Solibacter usitatus Ellin6076]
trEMBL	tr\|A0A072V0V9\|A0A072V0V9_MEDTR	0	DPP6 amino-terminal domain protein {ECO:0000313\|EMBL:KEH35326.1}

Sequence

Transcript Sequence

>Glyur000634s00028961.1
ATGAAACCACGCCACTTATTCTTCCTATGGATAATAATAGCGTTACTGTTACCGTCACGTTTAGCAGCTGAACCTGAAAAAGAAGAAGAGGATTCTTCTTCTTCTTCTTCTTCTTCTTCCACCAACAGCATCATCTTCACCACACTTGGCAGAGCTTTCTATGCCTTCGACATCTATTCCCTCCCAATTCACAACCCTCACCAAGAGTTAAGAATCACCGACGGCCACTCCGTCAATTTCAACGGCCACTTCCTCTCCAATAACCAAACCTCCATTCAACTCGTTTACGTTACGGAGCGTAANGGTTTCCCCTCCATATACTACGACGCCGTTTACCCCACCACAACACAAAAACGATTTAGATCTGCTCTTGAAATTTCTAATAGAGTCCAATTCCCTCTGTTACCACCCAATCAAGTAGTTTCCATGAAGGACAAACCCAGCGTGAGTAGCGATGGGGAATTTTTAATCTACGTCTCAACCCATGAGGACCCAGGTGTTCCACGGGCTAGTTGGNCCGCGGTTTACTCAACCCATCTCAAATCGGGCCTCACCGTAAGGCTCACNCCTTACGGTGTAGCTGATTTCAGCCCAGCACTCTCTCCCTCCGGCGTCTTCACCGCCGTCGCATCCTACGGTGATCACGGCTGGTCCGGCGAGGTGGAAGATCTCACCACCGACATCTACGTCTTCCTAACCCGCGACGGAACACGGCGGTTTAAGGTGGTNGAGCACGGTGGCTGGCCGTGTTGGGTTGACGATCGAACTATATACTTTCACCGGAGGGGAAACGACGGATGGTGGAGTATCTATAAAGCGATTCTCAACGCCGATTCATCTGACTCGGTTGAAATCGAGCGAGTCACCCCACCGGGTCTCCACGCGTTCACACCAGCAACCTCGCCGGGGAATCACAAGTTCATCGCCGTCGCGACAAGGAGGCCGGGCTCCGGTTATCGCCACATCGAGCTGTTCGATTTGGTCAACAACGAGTTCACTGAGTTGACTCGGTTCNTCTCGCCACGGACTCACCACCTCAACCCGTTCATCTCGCCCGATTCAACCCGGGTNGGGTACCACAAGTGCAGAGGAAAAGACGGTACTAATAACAGTCCCCAGTTTTTGCTCGAGAATGTTATGAGCCCCGTTCCCGGTCTAACGCTTTTCCGGTTCGTCGGTTCGTTTCCGGTTTTCTCGCCCTCGGGAGACCGAATCGCTTACGTGGAGATGCCAGGCGTTTATGTTGTGAACCGGGACGGTTCGAACCTGAGAAAGGTTTTGGACGCAATGGCGTTCTCGACCGCATGGGACCGGGTTCGACCGGGTGTAATCTACACCGCGATTGGTGAAACGTTTGCTTCCGAGAGTACCGAGGTTGATATAGTATCTATCGATGTTGACCGGAATAACCNGGTCAAGAGGTTGACCCATGATGGGAAGAACAACGCTTTTCCTTCACCTTCCCCGGATGGGAAATGGATCGTGTTCCGGTCGGGTCGGTCGGGTCATAAGAACTTGTATTTGATGGATGCGGTTGATGGAGAGAGAAAGGGTTTAAGAAGGTTAACGGAGGGTCCGTGGACCGATACCATGTGCAATTGGTCACCGGATGGGGAATGGATCGCCTTTGCATCGGATCGGCATGACCCAGGTACCGGGAGCTTTGAGATTTACCTGATCCACCCGGACGGGACCGGGTTGAGGAAGCTGATCCAAAGTGGGTCGGGTGGGAGGACGAACCACCCGTATTTCAGCCCCGATGGGAAGAGTATTGTGTTTACTTCGGACTATGCGGGTATATCCGCGGAGCCGATCTCCAACCCGCATCACTACCAGCCATATGGCGAGATATTCACTGTTGGGTTGGACGGGTCAGGTATCCAGAGATTGACCCATAATTCGTATGAGGATGGAACCCCGGCTTGGTCACCTAAATATATGAAGNCTGTGAATGTTGAAAGGGCCAAGGATGGCTCCTATTGCTCTTTNGAGGATTGTCATTGGCTCAATGACATGCCTAAATCTAATGGGACAGTTGTGGGTATGAATGCTCAGTGTGGTTTGTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00634	32156	34222	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000634s00028961.1	PF07676.7	PD40	472	507	7.20E-07
Glyur000634s00028961.1	PF07676.7	PD40	519	558	2.00E-08
Glyur000634s00028961.1	PF07676.7	PD40	581	599	3.90E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	39.947
SRR1783600	control	39.627
SRR1783602	moderate drought stress	107.205
SRR1811619	moderate drought stress	106.880

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	96.649
DRR006520	Root Summer glycyrrhizin high producing strain	100.293
DRR006521	Root Winter glycyrrhizin high producing strain	25.846
DRR006522	Root Winter glycyrrhizin high producing strain	25.096
DRR006523	Root Summer glycyrrhizin low producing strain	82.257
DRR006524	Root Summer glycyrrhizin low producing strain	83.848
DRR006525	Leaf Summer glycyrrhizin high producing strain	150.156
DRR006526	Leaf Summer glycyrrhizin high producing strain	149.722

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	16.483
SRR2868004	Drought Stress (root)	35.373
SRR2967015	Control (root)	52.738

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	60.556
SRR9715740	Leaf	101.777
SRR9715741	Leaf	71.055
SRR9715739	Root	76.136
SRR9715742	Root	52.171
SRR9715743	Root	45.286

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.776
SRR8749028	MeJA induced 9h	29.471
SRR8749029	MeJA induced 9h	5.112
SRR8749030	Uninduced	1.610
SRR8749031	Uninduced	0.537
SRR8749032	Uninduced	2.521

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	21.585
SRR8400027	Control - Root	13.931