Gene detail information of Glyur000634s00028960 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G44110.1 | 4.00E-136 | Cyclin A1;1 |
| NR | KEH35323.1 | 0 | carboxy-terminal domain cyclin [Medicago truncatula] |
| Swissprot | tr|Q9C6Y3|CCA11_ARATH | 5.00E-168 | Cyclin-A1-1 |
| trEMBL | tr|A0A072V1U7|A0A072V1U7_MEDTR | 0 | Carboxy-terminal domain cyclin {ECO:0000313|EMBL:KEH35323.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00634 | 27739 | 34370 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000634s00028960.1 | PF00134.18 | Cyclin_N | 169 | 230 | 9.10E-16 |
| Glyur000634s00028960.1 | PF00134.18 | Cyclin_N | 231 | 272 | 4.20E-10 |
| Glyur000634s00028960.1 | PF02984.14 | Cyclin_C | 274 | 393 | 1.20E-32 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 26.550 |
| SRR1783600 | control | 26.559 |
| SRR1783602 | moderate drought stress | 64.372 |
| SRR1811619 | moderate drought stress | 64.443 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 59.914 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 59.631 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 14.772 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 14.293 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 47.817 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 48.308 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 88.439 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 88.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 23.416 |
| SRR2868004 | Drought Stress (root) | 25.204 |
| SRR2967015 | Control (root) | 40.741 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 49.043 |
| SRR9715740 | Leaf | 73.385 |
| SRR9715741 | Leaf | 51.455 |
| SRR9715739 | Root | 55.523 |
| SRR9715742 | Root | 34.105 |
| SRR9715743 | Root | 37.544 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 29.199 |
| SRR8749028 | MeJA induced 9h | 31.481 |
| SRR8749029 | MeJA induced 9h | 16.213 |
| SRR8749030 | Uninduced | 2.593 |
| SRR8749031 | Uninduced | 0.602 |
| SRR8749032 | Uninduced | 2.224 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 21.218 |
| SRR8400027 | Control - Root | 15.727 |