Gene detail

Gene detail information of Glyur000630s00024945

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G60900.1	5.00E-117	FASCICLIN-like arabinogalactan-protein 10
NR	XP_004492650.1	0	PREDICTED: fasciclin-like arabinogalactan protein 10-like [Cicer arietinum]
Swissprot	tr\|Q9LZX4\|FLA10_ARATH	1.00E-177	Fasciclin-like arabinogalactan protein 10 (Precursor)
trEMBL	tr\|A0A072U0Q0\|A0A072U0Q0_MEDTR	0	Fasciclin-like arabinogalactan protein {ECO:0000313\|EMBL:KEH23329.1}

Sequence

Transcript Sequence

>Glyur000630s00024945.1
ATGGGTCGCCACTCCCCATTCCTCCTCCTCCTCCTCCTCTCCCTCGCCGCCATTGCCTCCGCCCACAACATCACCGACATCCTCGCCGACAACCCAGACTACAGCGAGTACAACACCTTCCTTTCCCAAACAAAGCTCGCCGACGAGATCAACAGCCGCCAGACCATCACCGTCTTAGTCCTCAACAACGCCGCNTTCTCCTCCATCTCCTCAAAACACCCCCTCTCCGTCGTCAAAAAGGTCCTAAGCCTCCTCGTACTCCTCGACTACTTCGACAACACCAAGCTCCACCAAATCACCGACGGAACAACCCTCTCCACAACACTCTACCAAACCACCGGCAACGCCAACGGCAACGTCGGATCCGTCAACATCACCGACCTAAAAGGCGGCAAGGTCGGTTTCGGCTCCGCCGCACCGGGCTCCAAACTCGAATCAACCTACACAAAATCCATCAAACAAATCCCTTACAATATCTCCGTTCTCGAAATCAGTGCCCCTATTATAGCCCCCGGTATTCTCTCTGCTCCACCTCCGTCATCCGACGTNAACATAACGGCTCTCATTGAGAAAGCCGGTTGCAAGACGTTTGCGTCGTTAATCGTTTCTAACGGCCTTATTAAGACTTTTCAGTCAGCCGCTGATAAGGGCTTGACGATTTTCGCACCGTCTGATGAGGCCTTTAAGGCACGTGGCGTACCTGATTTAAACAAGCTCACCAACGCTGAAATGGTCTCGCTCTTACAGTATCATGCTGCTGCTAAGTATTTACCTGTTGGGTCGTTGAAAACCACCAAGGATCCTATTGCCACGTTGGCCACCAACGGCGCCGGAAAGTTCGATTACACTGTTTCCGTTGCCGGTGACTCTGTTACACTTCACACCGGTGTTGACTCGTCGAGGGTTGCGGATACTGTCTTGGATTCTACTCCGCTTTCGATCTACTCTGTTGATAGTGTGCTTCTCCCGCCGGAGTTGTTCGCGAAGTCGCCGTCGCCTGCTCCGGCGCCGGAACCGGCTTCTGCTCCTTCTCCGACTCCGGCCTCTGCTCCCTCNCCGGCGTCTGATGCGCCTTCTCCGCTCCCCGCCTCGCCGCCGGCTCCTGCTGGCGAGACTCCCGACGGTGCTCCGGCGGATGCGCCGTCNTCGGAGGCGGAGCGTAGCAATTCTTCAGGCAAGTCCGCTGGGGTTCACGTGAAAGCCTCCTCTGCGGTTTTCACTGTCACAGTGACTGCTTTGTCGGCTATTGTGTTGATTTCCTCTGTTTTCATGTCCTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00630	125421	126698	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000630s00024945.1	PF02469.17	Fasciclin	193	323	5.50E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	376.977
SRR1783600	control	376.920
SRR1783602	moderate drought stress	364.698
SRR1811619	moderate drought stress	366.531

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	462.063
DRR006520	Root Summer glycyrrhizin high producing strain	450.058
DRR006521	Root Winter glycyrrhizin high producing strain	77.914
DRR006522	Root Winter glycyrrhizin high producing strain	75.681
DRR006523	Root Summer glycyrrhizin low producing strain	311.840
DRR006524	Root Summer glycyrrhizin low producing strain	307.835
DRR006525	Leaf Summer glycyrrhizin high producing strain	42.735
DRR006526	Leaf Summer glycyrrhizin high producing strain	41.978

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	166.252
SRR2868004	Drought Stress (root)	104.195
SRR2967015	Control (root)	142.297

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	79.752
SRR9715740	Leaf	37.366
SRR9715741	Leaf	22.750
SRR9715739	Root	699.755
SRR9715742	Root	447.614
SRR9715743	Root	487.880

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	55.568
SRR8749028	MeJA induced 9h	6.701
SRR8749029	MeJA induced 9h	8.658
SRR8749030	Uninduced	0.392
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.745

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	180.690
SRR8400027	Control - Root	260.020