Gene detail

Gene detail information of Glyur000630s00024940

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G45550.1	9.00E-84	cytochrome P450, family 76, subfamily C, polypeptide 4
NR	XP_003623778.1	0	Cytochrome P450 [Medicago truncatula]
COG	YP_002500282.1	2.00E-28	cytochrome P450 [Methylobacterium nodulans ORS 2060]
Swissprot	tr\|Q8VWZ7\|C76B6_CATRO	1.00E-117	Geraniol 8-hydroxylase
trEMBL	tr\|G7L1C7\|G7L1C7_MEDTR	0	Cytochrome P450 family protein {ECO:0000313\|EMBL:AES79996.1}

Sequence

Transcript Sequence

>Glyur000630s00024940.1
ATGCTTGACTCCACAAAAGTCCTTCGCCAACAAAAGTTGCAACAGTTGTTGGATTATGTGAAAAAAAAAGGCATGAAATGTGAGGTTGTTGATATTGGTGAGGCTGTATTTACAACAGTACTTAATTCAATTTCAAACACTTTCTTCTCTCTGGATTTGGCTCACTCTGCATCGGATGAAAAGTCTCAAGAGTTTAAGAACATTATTTGGGGTCTTATGGAAGAAGCTGGGAGGCCCAATGTTGCAGATTTCTTTCCCATTCTTCGTCCACTTGACCCACAACGTGTTCATGCCAGGATGGCCAATTATTTTAAGAAGTTGTTTAAGATTATTGATGGAATCATTGAAGAAAGGGCGCATTCAAGAGCTTCAAAAACTGATTTCGAAGTGTGCAATGATGACTTAATTGTTGCTGGAATAGACACAACATCAAGCACGATTGAATGGACTATGGCAGAGCTACTGCGTAACCCTGANAAATTAACAAAAGCAAGAAAAGAGTTGTGTCAAGCAATTGGCATAGATGAAACACTTGAAGAATCACACATTTCCAAGTTGCATTTCTTACAAGCAGTGGTGAAGGAAACACTTCGCTTGCACCCACCAGCTCCATTNTTAGTACCCCACAAGTGTGATGAATTGGTGAACATATGTGGCTACAAGGTGCCAAAAAATGCACAAGTATTAGTCAATGTGTGGGCCATGGGAAGAGACCCAACCATATGGGAAGATCCAAATAGTTTCATGCCTGAAAGGTTTTTGGAGTGTGACATTAACTATAAGGGTAATAACTTTGAGCTTATACCCTTTGGGGCNGGCAAAAGGATATGCCCGGGATTGTCATTAGCTCAAAGGACAGTGCATGTAATGGTGGCCTCCCTTCTGCACAACTTTGAATGGAAGCTTGCTGATGAGCTAATGCCAGAACACATGAACATGGATGAGAAGTTCGGGTTAACCTTAAAGAGGGTCCAACCTCTTCGAGTCCAAGCCATTCCAATCAAGCATGGTTAATTACATATCTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00630	95448	97449	-

Gene family

Gene family	subfamily
Cytochrome P450 Family	CYP76C4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0005506 iron ion binding

GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen

GO:0020037 heme binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000630s00024940.1	PF00067.17	p450	8	125	1.10E-08
Glyur000630s00024940.1	PF00067.17	p450	124	322	3.60E-64

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.567
SRR1783600	control	0.521
SRR1783602	moderate drought stress	0.528
SRR1811619	moderate drought stress	0.481

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.026
DRR006521	Root Winter glycyrrhizin high producing strain	0.163
DRR006522	Root Winter glycyrrhizin high producing strain	0.105
DRR006523	Root Summer glycyrrhizin low producing strain	0.431
DRR006524	Root Summer glycyrrhizin low producing strain	0.446
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.904
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.698

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.390
SRR2868004	Drought Stress (root)	1.075
SRR2967015	Control (root)	0.328

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	20.926
SRR9715740	Leaf	30.801
SRR9715741	Leaf	13.836
SRR9715739	Root	0.000
SRR9715742	Root	0.184
SRR9715743	Root	0.359

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.300
SRR8749028	MeJA induced 9h	0.103
SRR8749029	MeJA induced 9h	0.344
SRR8749030	Uninduced	0.085
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.014

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.226
SRR8400027	Control - Root	0.124