Gene detail

Gene detail information of Glyur000629s00020937

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G04980.2	3.00E-111	DNAse I-like superfamily protein
NR	XP_004511150.1	0	PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2-like isoform X2 [Cicer arietinum]
Swissprot	tr\|Q9LR47\|IP5P3_ARATH	4.00E-70	Type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2
trEMBL	tr\|G7L6W2\|G7L6W2_MEDTR	0	Inositol polyphosphate 5-phosphatase I {ECO:0000313\|EMBL:AET02572.2}

Sequence

Transcript Sequence

>Glyur000629s00020937.1
ATGGACAATGAATTTGAGGATAGACAAGCAGTTTCAGATATGATACCAAGCAATCAGCAGAGGAAAAAGCAGCAAGAATTTTTGGAAAACTGGCAAAAACAATTGAGGTTAGATGAGCTTGGTCGACATAATCTCATACTTATCTTTCCCCTACTTCTCCATTCTAAAACAAGTTCCTTTTGGCATGATCACTTTGACCACTCTCTCATTTTTTGTTTTGTTTATTATATTGATATTGATAATAGCTTGAGTTTACTTGCAGAAGCACTTTCTGGTCCATCCATCCAAAATCGAGGCTCGGAACCATCTATGTCTTCTAGTGAAGCACTTCAGAACTTCAGAGTTTTTGCAGCAACATGGAATGTTGGAGGGCAATGCCCCAGTGGGAATCTTAATCTGAGTGATTTTCTTCAGGTTCGAAATGAACCAGATATGTATGTTTTGGGCTTTCAGGANATTGTCCCTTTGAATGCTGGAAATGTGCTTGTATTAGAGGACAATGAGCCTGCTGCAAAATGGCTTGCCTTGATCAACCAATCACTCAATGGTCCTTCAGATTTGGCTTCCAAAAATGGACTAAAACCGACCGCGTCATTCGGAGGGTCGTTGTTCTTCCAAAAGCCTTCCCTGAAGAAGATCAAGAAGACTTTCAAGAAAATAAATGGGAAGAGGCTGAAGAGTTGTAACTGTGTCCTGGAAATGGAAAGGAATAAGGCTGCCAAGGATTTCTGTTTCCGCTGCCAAGAATCGAATCTAAACTCGGATGATTCATCCACNGAAGAGGAGGATGACAATTTCCCAATTTCTGTTGCTTTGGCAACTAGCCAGATGAAATACAGTCTTGTTGCTAGTAAGCAAATGGTTGGAATTTTTGTTAGTGTCTGGATGAAGAAGGAGCTTGTTCATCATCTGGCATCTGGAGAGAAAGANGGCGACGAGCTACGCAGGAATCTTGATGTCATAGAGATACTAAAGAACACTCAGTTCCCAAGGATTTGCAAGACACCATACAGTAGGATGCCTGACAAAATTTTAGATCATGACCGAATCATATGGTTTGGGGACTTGAATTACAGAATTTCTTTGAGCCGTGATGACGCAAAAAGGCTTGTGGAAATGAAGGATTGGCCTGCACTTTTTAACAAGGATCAGCTTAAAATGGAAAGGGAAGCTGGTCGGGTATTTAAGGGGTGGAAAGAGGGGAAGATCTACTTTGCACCTACTGATAAATATGCCTTCAACTCAGATACTTACTATGTTGAAGGTGTAAAAGTTTCAAAGAACAAAAGGAGAACTCCAGCTTGGTGCGATAGAATTTTGTGGCATGGAAGGGGAATACAACAACTTTCGTACGTGCGTAAAGAATTCAAGTTTTCAGACCATCGACCTGTTTGTGCAACATTTTTGGTAGAAGTTGAGGTTATGTTCCGGGGACNAAAAAAGAAAGTCTCTACTTTCAACTTTCACATTGGTACCACTGATGCACTAACTACAAGGATCGCAAGAGTTAATATAAATATTGTAAGTTTTCCGTTCATAGTCAACAAAAGTTTGAAGGCTTTGGACACTGCCAAGGAACAAATTGTGGCATTCAGAAATGAAGAAGTGATGCAAAATAAGGAAGCTAGACATTGCTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00629	106026	110725	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0046856 phosphatidylinositol dephosphorylation

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000629s00020937.1	PF03372.18	Exo_endo_phos	118	461	1.90E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.947
SRR1783600	control	0.928
SRR1783602	moderate drought stress	0.736
SRR1811619	moderate drought stress	0.723

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.728
DRR006520	Root Summer glycyrrhizin high producing strain	3.630
DRR006521	Root Winter glycyrrhizin high producing strain	1.843
DRR006522	Root Winter glycyrrhizin high producing strain	1.846
DRR006523	Root Summer glycyrrhizin low producing strain	1.587
DRR006524	Root Summer glycyrrhizin low producing strain	1.399
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.958
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.067

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.608
SRR2868004	Drought Stress (root)	10.854
SRR2967015	Control (root)	11.367

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.203
SRR9715740	Leaf	2.595
SRR9715741	Leaf	3.102
SRR9715739	Root	0.209
SRR9715742	Root	6.061
SRR9715743	Root	4.568

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.488
SRR8749028	MeJA induced 9h	0.393
SRR8749029	MeJA induced 9h	0.362
SRR8749030	Uninduced	0.195
SRR8749031	Uninduced	0.172
SRR8749032	Uninduced	0.012

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.925
SRR8400027	Control - Root	2.735