Gene detail

Gene detail information of Glyur000629s00020925

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G54320.3	5.00E-73	Integrase-type DNA-binding superfamily protein
NR	KHN38126.1	2.53E-179	Ethylene-responsive transcription factor WRI1 [Glycine soja]
Swissprot	tr\|Q6X5Y6\|WRI1_ARATH	4.00E-96	Ethylene-responsive transcription factor WRI1
trEMBL	tr\|I1KVX7\|I1KVX7_SOYBN	5.00E-178	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G24420.1}

Sequence

Transcript Sequence

>Glyur000629s00020925.1
ATGAAGAGGTCTCCACCATCTTCTTGTTCATCATCATCTTCTTCAATTGGGTTTGAGGAAGCTCCCAAAAGAAGGGGTAGTAATAGTAGTAATAATAATAAGCAGCAGAAGAAGCAGCAGCAGCATAATCCAAGAAGGAATCTGATAAAGTCACAAAAGAATTGCAAGCAGAACCAAACAACCACCACTACTACTGGCAGAAGAAGCTCCATTTACAGAGGAGTTACAAGGTTTGAAGCTCACCTATGGGATAAGAGTTCTTGGAACAACATTCAGAACAAGAAGGGACGACAAGGGGCATATGATACTGAAGAAGCAGCAGCTCGTACCTATGATCTTGCAGCCCTTAAGTATTGGGGGAAGGATGCAACCTTGAATTTCCCGATAGAAACATATGCAAAGGACATTGAGGAAATGGACAAGGCCTCAAAAGAAGAATACTTGGCTTCTTTGCGGCGCCAAAGCAGTGGTTTCTCTAGGGGCATTTCTAAGTATCGTGGGGTAGCCAGGCATCATCATAATGGTCGCTGGGAAGCTCGGATTGGAAGAGTATGCGGTAACAAGTACCTCTACTTGGGGACATATAAAACTCAAGAGGAGGCAGCTGTGGCATATGATATGGCAGCAATAGAGTACAGAGGACTCAATGCAGTGACCAATTTTGACATAAGCAACTACATTGACAAAATAAAGAAGAAAGATGANGATGAATCCCCTCAACAAACAGAAGCACAAACAGAAACAGCTCCTAATTCCCCTCCTGACTCTGAAGAGGCAGAAGAAGAGACAACAACACCACCCCCTCCTGAGAATCTTCACANGCAACAACCACAGCAACAGCACCAAGTTCAAAACACTGATCATGTTCCTCCTCCAAGTGAGGAATCCTCACTAGTCACTGTTATGGACCATGTTCTTGAGCAGGACCTACCATGGAGCTTCATGTACACTACTGGGTTACCACAGTTTCAACAAGACCCAGATTTGGATCTGAGCAAAGCTGAGGACTTTATGAGCATGTTTGATGGTGCTGGCTTTGAAGAGGACATTGAATTTCTGTTCAGCACAGAACCTGGTGGTGGTGTTGGTGGGAGTTGTGATATCAATATCAGTGCAGTTTTGGATAGTATTGACTGTGGAGAGACAAATGGGGGTGTAGCTGGAAGCATGGTGGTGGATAACAACAAGAAGCAGAAACAGCAGCAGCAGCTATTGAATTCCTTGGATGCTTCTTCACCATCATCTACAACAACTACAGTTTCTTGTAACTATTCTCTATGATGTTGTCTTGAGGAGGTGGTGTTGTGGAGAGATTGTTGGGGTTTGTTTGGTTTAGTGTNTTGTTGGGATCTGTTGTGATAGGTGGGATATATGGGTGTGAGACAATTGGGTGAATTGTGAAAGTGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00629	40311	44543	+

Gene family

Gene family	subfamily
Transcription Factors Family	AP2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function

GO:0003677 DNA binding

GO:0003700 transcription factor activity, sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000629s00020925.1	PF00847.15	AP2	77	120	0.00011
Glyur000629s00020925.1	PF00847.15	AP2	163	214	1.30E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.399
SRR1783600	control	5.433
SRR1783602	moderate drought stress	5.160
SRR1811619	moderate drought stress	5.271

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.308
DRR006520	Root Summer glycyrrhizin high producing strain	0.304
DRR006521	Root Winter glycyrrhizin high producing strain	0.807
DRR006522	Root Winter glycyrrhizin high producing strain	0.769
DRR006523	Root Summer glycyrrhizin low producing strain	0.017
DRR006524	Root Summer glycyrrhizin low producing strain	0.079
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.458
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.523

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	23.845
SRR2868004	Drought Stress (root)	11.074
SRR2967015	Control (root)	11.456

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.616
SRR9715740	Leaf	0.162
SRR9715741	Leaf	0.367
SRR9715739	Root	3.936
SRR9715742	Root	2.032
SRR9715743	Root	2.897

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.049
SRR8749028	MeJA induced 9h	0.023
SRR8749029	MeJA induced 9h	0.112
SRR8749030	Uninduced	0.525
SRR8749031	Uninduced	0.420
SRR8749032	Uninduced	0.051

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	35.950
SRR8400027	Control - Root	35.924