Gene detail information of Glyur000628s00026646 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G20030.2 | 3.00E-60 | Pathogenesis-related thaumatin superfamily protein |
| NR | XP_003535208.2 | 5.56E-116 | PREDICTED: thaumatin-like protein 1a-like [Glycine max] |
| Swissprot | tr|Q9FSG7|TP1A_MALDO | 1.00E-103 | Thaumatin-like protein 1a (Precursor) |
| trEMBL | tr|I1L925|I1L925_SOYBN | 2.00E-116 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA10G06880.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00628 | 116150 | 120707 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000628s00026646.1 | PF00314.12 | Thaumatin | 49 | 252 | 7.00E-77 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.384 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.505 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.000 |
| SRR2868004 | Drought Stress (root) | 0.065 |
| SRR2967015 | Control (root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 105.649 |
| SRR9715740 | Leaf | 4.070 |
| SRR9715741 | Leaf | 46.470 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.228 |
| SRR9715743 | Root | 0.258 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.455 |
| SRR8749028 | MeJA induced 9h | 0.781 |
| SRR8749029 | MeJA induced 9h | 0.730 |
| SRR8749030 | Uninduced | 0.757 |
| SRR8749031 | Uninduced | 0.807 |
| SRR8749032 | Uninduced | 1.139 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.112 |
| SRR8400027 | Control - Root | 0.221 |