Gene detail

Gene detail information of Glyur000626s00022213

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G07050.1	2.00E-32	CCT motif family protein
NR	XP_003544900.2	3.56E-94	PREDICTED: protein CHLOROPLAST IMPORT APPARATUS 2-like isoform X1 [Glycine max]
Swissprot	tr\|Q9LU68\|CIA2_ARATH	5.00E-23	Protein CHLOROPLAST IMPORT APPARATUS 2 (Precursor)
trEMBL	tr\|K7M839\|K7M839_SOYBN	1.00E-94	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA14G37721.1}

Sequence

Transcript Sequence

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00626	69794	71048	+

Gene family

Gene family	subfamily
Transcription Factors Family	Orphans

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000626s00022213.1	PF06203.9	CCT	181	223	6.30E-21

Expression pattern

SRA Experiment	Description	TPM
SRR1783599	control	0.119
SRR1783600	control	0.099
SRR1783602	moderate drought stress	1.204
SRR1811619	moderate drought stress	1.242

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.762
DRR006520	Root Summer glycyrrhizin high producing strain	3.853
DRR006521	Root Winter glycyrrhizin high producing strain	1.064
DRR006522	Root Winter glycyrrhizin high producing strain	1.029
DRR006523	Root Summer glycyrrhizin low producing strain	4.042
DRR006524	Root Summer glycyrrhizin low producing strain	3.934
DRR006525	Leaf Summer glycyrrhizin high producing strain	31.975
DRR006526	Leaf Summer glycyrrhizin high producing strain	31.324

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.052
SRR2868004	Drought Stress (root)	0.000
SRR2967015	Control (root)	0.832

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.123
SRR9715740	Leaf	0.091
SRR9715741	Leaf	0.385
SRR9715739	Root	0.000
SRR9715742	Root	0.076
SRR9715743	Root	0.011

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.253
SRR8749028	MeJA induced 9h	0.544
SRR8749029	MeJA induced 9h	0.413
SRR8749030	Uninduced	0.068
SRR8749031	Uninduced	0.276
SRR8749032	Uninduced	0.066

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.084
SRR8400027	Control - Root	0.166