Gene detail information of Glyur000626s00022206 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G63520.1 | 0 | carotenoid cleavage dioxygenase 1 |
| NR | Q8LP17.1 | 0 | RecName: Full=Carotenoid 9,10(9',10')-cleavage dioxygenase 1; AltName: Full=PsCCD1; AltName: Full=PsNCED1 [Pisum sativum] |
| COG | YP_007122928.1 | 2.00E-113 | lignostilbene-alpha,beta-dioxygenase-like protein [Microcoleus sp. PCC 7113] |
| Swissprot | tr|Q8LP17|CCD1_PEA | 0 | Carotenoid 9,10(9',10')-cleavage dioxygenase 1 |
| trEMBL | tr|B5BLW2|B5BLW2_MEDTR | 0 | Carotenoid cleavage dioxygenase 1 {ECO:0000313|EMBL:CAR57918.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00626 | 39827 | 47161 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000626s00022206.1 | PF03055.10 | RPE65 | 27 | 465 | 2.00E-125 |
| Glyur000626s00022206.2 | PF03055.10 | RPE65 | 27 | 82 | 2.60E-18 |
| Glyur000626s00022206.2 | PF03055.10 | RPE65 | 86 | 445 | 2.30E-107 |
| Glyur000626s00022206.3 | PF03055.10 | RPE65 | 1 | 411 | 6.00E-111 |
| Glyur000626s00022206.4 | PF03055.10 | RPE65 | 1 | 28 | 0.0012 |
| Glyur000626s00022206.4 | PF03055.10 | RPE65 | 32 | 391 | 1.50E-107 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 12.222 |
| SRR1783600 | control | 12.154 |
| SRR1783602 | moderate drought stress | 19.891 |
| SRR1811619 | moderate drought stress | 19.913 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 15.045 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 14.919 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 14.764 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 14.382 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.630 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.802 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 36.743 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 36.449 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 13.736 |
| SRR2868004 | Drought Stress (root) | 16.158 |
| SRR2967015 | Control (root) | 14.607 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 34.293 |
| SRR9715740 | Leaf | 46.414 |
| SRR9715741 | Leaf | 37.528 |
| SRR9715739 | Root | 1.613 |
| SRR9715742 | Root | 7.859 |
| SRR9715743 | Root | 5.985 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 9.365 |
| SRR8749028 | MeJA induced 9h | 9.152 |
| SRR8749029 | MeJA induced 9h | 6.769 |
| SRR8749030 | Uninduced | 8.942 |
| SRR8749031 | Uninduced | 5.280 |
| SRR8749032 | Uninduced | 4.531 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 21.293 |
| SRR8400027 | Control - Root | 17.453 |