Gene detail information of Glyur000626s00022205.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G40300.1 | 4.00E-62 | ferritin 4 |
| NR | XP_003544308.1 | 3.39E-117 | PREDICTED: ferritin-3, chloroplastic-like [Glycine max] |
| COG | YP_005081623.1 | 2.00E-07 | Ferritin [Pseudovibrio sp. FO-BEG1] |
| Swissprot | tr|Q948P6|FRI3_SOYBN | 2.00E-95 | Ferritin-3, chloroplastic (Precursor) |
| trEMBL | tr|K7M833|K7M833_SOYBN | 1.00E-117 | Ferritin {ECO:0000256|RuleBase:RU361145} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00626 | 35330 | 39099 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K00522 | FTH1 | EC:1.16.3.2 | Mineral absorption | map04978 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000626s00022205.1 | PF00210.19 | Ferritin | 95 | 224 | 3.10E-20 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.221 |
| SRR1783600 | control | 0.561 |
| SRR1783602 | moderate drought stress | 0.401 |
| SRR1811619 | moderate drought stress | 1.579 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.256 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.878 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.267 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.743 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.486 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.335 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.214 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.388 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.753 |
| SRR2868004 | Drought Stress (root) | 0.339 |
| SRR2967015 | Control (root) | 0.728 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.231 |
| SRR9715740 | Leaf | 0.051 |
| SRR9715741 | Leaf | 0.545 |
| SRR9715739 | Root | 0.022 |
| SRR9715742 | Root | 0.282 |
| SRR9715743 | Root | 0.275 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.175 |
| SRR8749028 | MeJA induced 9h | 0.134 |
| SRR8749029 | MeJA induced 9h | 0.117 |
| SRR8749030 | Uninduced | 0.306 |
| SRR8749031 | Uninduced | 0.330 |
| SRR8749032 | Uninduced | 0.064 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.234 |
| SRR8400027 | Control - Root | 0.240 |