Gene detail information of Glyur000626s00022203 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G07090.1 | 4.00E-69 | Protein of unknown function (DUF640) |
| NR | XP_002313971.1 | 1.60E-96 | hypothetical protein POPTR_0009s07990g [Populus trichocarpa] |
| Swissprot | tr|Q9LMK2|LSH6_ARATH | 2.00E-91 | Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 |
| trEMBL | tr|B9HNA6|B9HNA6_POPTR | 6.00E-97 | Uncharacterized protein {ECO:0000313|EMBL:EEE87926.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00626 | 14731 | 15426 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000626s00022203.1 | PF04852.7 | DUF640 | 25 | 149 | 1.40E-63 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 32.457 |
| SRR1783600 | control | 30.840 |
| SRR1783602 | moderate drought stress | 32.043 |
| SRR1811619 | moderate drought stress | 31.020 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 98.061 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 96.218 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 26.929 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 25.143 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 144.287 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 141.256 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.445 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.357 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 25.986 |
| SRR2868004 | Drought Stress (root) | 23.322 |
| SRR2967015 | Control (root) | 26.749 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 12.890 |
| SRR9715740 | Leaf | 12.787 |
| SRR9715741 | Leaf | 10.196 |
| SRR9715739 | Root | 247.842 |
| SRR9715742 | Root | 60.868 |
| SRR9715743 | Root | 88.023 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 11.208 |
| SRR8749028 | MeJA induced 9h | 5.945 |
| SRR8749029 | MeJA induced 9h | 10.558 |
| SRR8749030 | Uninduced | 8.206 |
| SRR8749031 | Uninduced | 0.110 |
| SRR8749032 | Uninduced | 2.078 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 63.014 |
| SRR8400027 | Control - Root | 64.265 |