Gene detail information of Glyur000625s00022696 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G59850.1 | 6.00E-72 | Ribosomal protein S8 family protein |
| NR | KHN33076.1 | 9.95E-92 | 40S ribosomal protein S15a-1 [Glycine soja] |
| COG | YP_001541562.1 | 2.00E-41 | 30S ribosomal protein S8 [Caldivirga maquilingensis IC-167] |
| Swissprot | tr|P42798|R15A1_ARATH | 2.00E-91 | 40S ribosomal protein S15a-1 |
| trEMBL | tr|A0A096R9J3|A0A096R9J3_MAIZE | 5.00E-91 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GRMZM2G083497_P04} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00625 | 108787 | 110519 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000625s00022696.1 | PF00410.14 | Ribosomal_S8 | 55 | 178 | 6.70E-25 |
| Glyur000625s00022696.2 | PF00410.14 | Ribosomal_S8 | 55 | 178 | 6.70E-25 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 91.124 |
| SRR1783600 | control | 90.977 |
| SRR1783602 | moderate drought stress | 68.781 |
| SRR1811619 | moderate drought stress | 67.755 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 105.272 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 102.448 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 48.299 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 47.152 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 86.794 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 86.289 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 25.384 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 25.224 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 157.094 |
| SRR2868004 | Drought Stress (root) | 98.031 |
| SRR2967015 | Control (root) | 89.202 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 54.569 |
| SRR9715740 | Leaf | 34.708 |
| SRR9715741 | Leaf | 34.642 |
| SRR9715739 | Root | 85.868 |
| SRR9715742 | Root | 67.963 |
| SRR9715743 | Root | 69.265 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 231.914 |
| SRR8749028 | MeJA induced 9h | 100.049 |
| SRR8749029 | MeJA induced 9h | 163.601 |
| SRR8749030 | Uninduced | 39.632 |
| SRR8749031 | Uninduced | 15.400 |
| SRR8749032 | Uninduced | 27.312 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 93.945 |
| SRR8400027 | Control - Root | 95.130 |