Gene detail

Gene detail information of Glyur000625s00022691.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G06030.1	5.00E-121	NPK1-related protein kinase 3
NR	XP_004496768.1	0	PREDICTED: mitogen-activated protein kinase kinase kinase 3-like [Cicer arietinum]
COG	YP_006528519.1	1.00E-16	serine/threonine protein kinase with PASTA sensor(s) [Melioribacter roseus P3M-2]
Swissprot	tr\|Q40541\|NPK1_TOBAC	0	Mitogen-activated protein kinase kinase kinase NPK1
trEMBL	tr\|G7IE47\|G7IE47_MEDTR	0	MAP kinase kinase kinase {ECO:0000313\|EMBL:AES62717.2}

Sequence

Transcript Sequence

>Glyur000625s00022691.1
TTATTGCGCCAGCCACTGATACTCATCGAAAAGTCAAAACGAGATAACCGTTACGTGACTGAGCAGTAGCAGCAAATTTGAAAAAACTCACATTCTGGTTACTTTTCCCTCCTTCAAAACCCGAATGCACACCAAATGAACACTCCCTTCGTCACCAAACCCTAGCCTTCTTCCTCCCCTTCGCAGATGCAAGAGTTTTTGGGCTCCGTTCGCAAATCCNTCGTTTTCAGAAGCACATCTGCACGCTGCGACGATGGACGACCCTTCGCCGGAATCGCCGACAAGATTGGCTCCGCCATTCGCAAATCGCGAATCGGCCTCAANCCTCTTCCTCCGCCACCGATCCGGTGGCGCAAGGGCGAGTTGATTGGTTCCGGCGCCTTCGGTCGCGTCTACATGGGCATGAACCTTGACTCNGGGGAGCTTATTGCCATCAAACAGGCTAATATTCGGGAGCTCGAAGAAGAAGTGAAGCTTCTCAAGAATCTTAAGCATCCTAATATTGTTAGATACTTGGGAACTGCTAGAGAGGAAGATTCCTTAAATATTCTGCTGGAGTTTGTATCTGGTGGATCTATCTCATCTCTCCTGGGGAAATTCGGATCCTTCCCTGAGTCNGTGAGTAGTTTTTACTTTCTGAAGCGCATAGAGAATCTATTGGGTTGTAATGCTTTATATTCCAATTTTTTTTTACAGGTTATAAGAATGTATACAAAACAAGTTTTACAGGGCCTTGAATACCTTCACGATAACGGAATTATTCACAGGGATATTAAGGCTACCATAAATGGTGCAAAGTCAATAAAGGGTACTGCGCATTGGATGTCACCTGAAGTTATTTTACAGACAGGACATACAACCTCTACGGATATATGGAGTGTTGCATGCACTGTGATAGAGATGGCCACAGGAAAGCCTCCATGGAGCCAACAGTATCCCCAGGAGGTTTCGGCTCTTTTCTACATTGGGACAACTAGATCTCATCCACCCATACCTGAACATCTGTCTGTTGAGGCAAAGGACTTTTTGCTGAAATGCTTTCAGAAACCAGTGATACATTTTAATCACTACCCATCAATTTGTGTTGGCAGGGAACCAAATTTAAGGCCTTCTGCATCAGACTTGTTACTGCATCCATTCATCACCTGTGAGTATCAGGAATCCCATTCAATATTAAGCAGTTCAGCCAGGGAGCAAGACTCTTGCAATCAGATGGCAACATATGGGATGAACTCTAGAAACTTTTTGGATTCTATCAAGGGATCAACATGCACGGGCCTAAAGAATGTCTGTCAGATGGATAGTGTAAGGTTCTCGACCGTATATCATGCAAATCTAAAAGCAGGTTCCTACCATGGAGCAGACAACTATGATGATGACATGTGTCAGATGGATTATAAAGATGATTTCTTGGATGCTTCACCAGTAAAANCTAAATCCCTATTTGCTGATGATGATATAAAGAGTTTCAATCCTATTTGNGAACCTGTGGATGATGACTGGCCTTGCAAGTTTGATGAAAATCTAAATTTGAAGAAAAGCGGACTGAACTTATCTCCAGAGCAAACTATTAGGAAAACTATGAGTCCCGAACCATCTCCCAAGGCAGAGAATGAGTTCTCNTTTTCAACTGAACCTCTTGGAGTTGAAGATGATGATGAAGTCACTGAGTCCAAAATTAGAGCTTTCCTAGATGATAAGGCCTTTGAACTGAAGAAGCTCCAAACACCTCTTTATGAAGAATTCTTTAGCATATCAAATGCAGTCATTGCTCCTACTCCTGTTGCAGTTGCACAGAGTAAAGTTATTTCAGATGTCTCAAATGTAACATCAAAAAGCAGGTCTCCTAGTCAAGCTAAAAGGCGATTCTCAATGGCTGGCAGTGCCAATGTAGCAAGCCCTGGGAGTCATAGCAAATATCTTTCAAAGCTTAGTGGTGCTCACAATCGACCTTTGCAGGAAATTCAACCATCTGAGCTTAATGAATCAAAGGAGACTCTTCATGATGCTGAGCTGGAATCATTTAGTGTTAGCTCAAGCTTCTCCGAGAGACAAAGGAAATGGAAAGAAGAACTTGTTGAAGAGCTTGAGTGGAAGCGAGGCAAAGGTGATGCGTCAAACAGGATTTGGAGGGAAGCTAACATCCCCAACATCCCCAAAAGGATCGCAATTTTTATAGAGACTGGTTGATTACTCTTTGCTTTTCCATGCTACTGATTTTCTATTCATCTTGACATTTTCCTATAGGGAGAAAGAAAAACTGTTTTTCCTTTGCAGAAGTTGTCAAATAGGTAACATCATTTACCATGCCCTGTAACCTTGCAATGTCATCGAAATAGATGTTGCAACGGAGAGTTAGAAATATTGGATCAGCAGGAAAATGTAAAATTAGCAGTATATTGATATTGATTTCCTTTCTCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00625	91849	97158	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:4.1.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000625s00022691.1	PF00069.20	Pkinase	55	198	8.10E-25
Glyur000625s00022691.1	PF00069.20	Pkinase	203	319	2.30E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.785
SRR1783600	control	3.820
SRR1783602	moderate drought stress	2.614
SRR1811619	moderate drought stress	2.658

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.149
DRR006520	Root Summer glycyrrhizin high producing strain	5.365
DRR006521	Root Winter glycyrrhizin high producing strain	2.329
DRR006522	Root Winter glycyrrhizin high producing strain	2.284
DRR006523	Root Summer glycyrrhizin low producing strain	1.447
DRR006524	Root Summer glycyrrhizin low producing strain	1.441
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.869
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.853

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.567
SRR2868004	Drought Stress (root)	8.550
SRR2967015	Control (root)	11.273

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.884
SRR9715740	Leaf	2.232
SRR9715741	Leaf	1.234
SRR9715739	Root	1.582
SRR9715742	Root	3.343
SRR9715743	Root	3.414

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	10.871
SRR8749028	MeJA induced 9h	8.678
SRR8749029	MeJA induced 9h	5.126
SRR8749030	Uninduced	1.862
SRR8749031	Uninduced	1.120
SRR8749032	Uninduced	0.875

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.049
SRR8400027	Control - Root	10.300