Gene detail

Gene detail information of Glyur000625s00022686

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G47480.1	1.00E-61	alpha/beta-Hydrolases superfamily protein
NR	XP_006588437.1	0	PREDICTED: uncharacterized protein LOC100785409 isoform X1 [Glycine max]
COG	NP_070544.1	2.00E-21	carboxylesterase [Archaeoglobus fulgidus DSM 4304]
Swissprot	tr\|Q5NUF4\|HIDM_GLYEC	0	2-hydroxyisoflavanone dehydratase
trEMBL	tr\|G7IE27\|G7IE27_MEDTR	0	2-hydroxyisoflavanone dehydratase {ECO:0000313\|EMBL:AES62697.2}

Sequence

Transcript Sequence

>Glyur000625s00022686.1
ATGGCTTCCACAACACCCACCGCCTCCACCGACACTAAAACGATTGTTGCAGAGATTCCTACCTATATCCGAGTCTTCAGTGACGGTACCGTTGAACGGCCACGACAAGCACCCACAGTGCCACCCATGCTCGATGACCCAAAAACAGGAGTCTCATCCAAAGACATCACCATCTCACACCACCCCAAAATCTCCGCTCGCCTTTTCCTTCCAAAACTCAGCGACCGAGCCGAAAAAGTTCCCATCTTGGTCTTCTTTCACGGAGGTGGATTCTTCTTCGAATCAGCTTTCTCACAACTCTACCATGACCACTTCAACAGCTTCGTTTCACAAACAAATGTTCTAGCGGTTTCAGTGGAGTACAGGCTGGCACCAGAACACCCTCTCCCTGCATGTTACCATGATTGTTGGGATGCACTCCAATGGGTATCTTCCCATTCTACAAATAATAGCCCCAACATTAACAATATTGCAGAGCCATGGTTGATTGAGCATGGTGATTTCAACAGGGTTTTCATTGGGGGTGATAGTGCTGGTGGTAACATCGTGCACAACATCGCCATGCGTGCTGGGGATGAGGCTTTACCCTGTGATGTTAATATATTGGGGGCTATTTTTGCACACCCTTATTTCTACGGCTCGTCCCCAATTGGGTCAGAACCTGTTGAAAAGCGTGAAGAGGAGTTGTGCTATTTGGTTTGGAAATTGGTGTATCCTTCTGCGCCTGGTGGGATTGATAACCCCATGGTCAACCCTTTGGGTCCAGGGGCACCTAGTCTTGCTGGGCTTGGGTGTTCTAAGATCATTGTGTGTGTTGCTGGGAAGGACAAAATTAGGGATAGAGGGGTTTGGTACTATGAGGCTGTGAAGAAGAGTGGGTGGAAAGGGGAAATTGAGTTCTTTGAAGAGAAAGAGGAGGACCATGTTTATCATATCTTTCATCCGGAATCTGAGAATGGCAAGAAGTTGATCAAACGCTTGGCTTTGTTTCTCCACGAGGAGCTTCCTCCTCTTCTTCGGGTCTACAAAGATGGAACCGTGGAGCGATTCCTAGGCTCATCGTTTGTGCCACCTTCCCCTGAAGACCCCGAAACAGGGGTTTCCACAAAAGACATAGTAATCTCAGAGAACCCCACCATCTCCGCACGTGTTTACCTTCCAAAACTGAACAACACCACCGAGAAGCTCCCAATCTTGGTCTACTACCACGGTGGCGCGTTCTGCCTCGAATCTGCTTTCTCCTTCCTCCACCAACGCTACCTCAACATCGTTGCTTCCAAGGCAAATGTTCTAGTAGTTTCCATCGAGTACAGGCTCGCCCCAGAACACCCTCTTCCCGCTGCATATGAAGATGGTTGGCATGCTCTCAAATGGGTCACTTCTCATTCCACCACCACCACCACCAACAACAACAAACCCACAAACGCTGACCCATGGTTGATCAAACACGGTGATTTCAACAGGTTCTACATCGGGGGTGACACTGCTGGTGCAAACATTGCACACAATGCGGCTCTTCGTGTCGGTGCTGGTGGTGCTGAGGCCTTACCTGGGGGGGTGAGAATAGCAGGGGTACTCTCTGCTTTTCCTCTGTTTTGGGGTTCTAAACCTGTTTTGTCAGAACCTGTTGAGGGGCATGAGAAGAGCTCACCCATGCAAGTTTGGAACTTTGTGTACCCAGATGCACCGGGTGGCATAGATAACCCACTAATCAACCCTTTGGCACCTGGGGCTCCTAACTTGGCCACACTTGGGTGTCCAAAGATGTTGGTCTTTGTTGCGGGGAAGGATGATCTTAGAGACAGAGGGATTTGGTACTATGAGGCTGTGAAGGAAAGTGGGTGGAAAGGGGATGTGGAACTTGTTCAGTATGAAGGGGAGGAACATTGCTTCCAGATCTACCATCCTGAAACTGAGAATTCTAAAGATCTCATCGGTCGCATCGCTTCCTTCCTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00625	34494	40578	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function
GO:0016787 hydrolase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000625s00022686.1	PF07859.8	Abhydrolase_3	83	311	2.50E-43
Glyur000625s00022686.1	PF07859.8	Abhydrolase_3	399	632	7.10E-44

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	43.808
SRR1783600	control	45.104
SRR1783602	moderate drought stress	53.460
SRR1811619	moderate drought stress	53.352

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	13.385
DRR006520	Root Summer glycyrrhizin high producing strain	12.975
DRR006521	Root Winter glycyrrhizin high producing strain	3.614
DRR006522	Root Winter glycyrrhizin high producing strain	3.463
DRR006523	Root Summer glycyrrhizin low producing strain	43.856
DRR006524	Root Summer glycyrrhizin low producing strain	44.556
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.588
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.690

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	64.080
SRR2868004	Drought Stress (root)	80.879
SRR2967015	Control (root)	62.445

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	34.972
SRR9715740	Leaf	16.406
SRR9715741	Leaf	37.398
SRR9715739	Root	76.672
SRR9715742	Root	46.907
SRR9715743	Root	50.322

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	24.580
SRR8749028	MeJA induced 9h	32.925
SRR8749029	MeJA induced 9h	18.042
SRR8749030	Uninduced	94.512
SRR8749031	Uninduced	38.958
SRR8749032	Uninduced	27.517

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	57.085
SRR8400027	Control - Root	47.336