Gene detail

Gene detail information of Glyur000625s00022683

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G47480.1	7.00E-58	alpha/beta-Hydrolases superfamily protein
NR	KHN02697.1	3.02E-168	Putative carboxylesterase 1 [Glycine soja]
COG	NP_215916.1	2.00E-18	Probable lipase LipH [Mycobacterium tuberculosis H37Rv]
Swissprot	tr\|Q5NUF4\|HIDM_GLYEC	2.00E-132	2-hydroxyisoflavanone dehydratase
trEMBL	tr\|I1LE69\|I1LE69_SOYBN	1.00E-168	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA10G39600.1}

Sequence

Transcript Sequence

>Glyur000625s00022683.1
ATGGCTACCAATTCCAGCAACACCAAAGAAATCGTTGCAGATATTCCCACCTGGATCCGTGTCTTCAGCGACGGCACCGTAGACCGCCCTCGAAACACTCCAATAGTCTCACCCCTGCTTCACGACCCACAAACTGGAGTCTCCTCCAAAGACATTATCATCTCACACAACCCCGCAATAATCTCCGCACGCATTTACCTTCCAAACACCGCCAAATCCAAGGCTGCAGAGAAATTCCCCATCTACGTCTACTTTCATGGGGGTGCATTCTTCTGTGAATCTGCTTTCTCAAAACTCTTCCATGACCACTTCATCAAACTGGTCCCACAAGCAAACGTGATAGTTGTTTCTGTGGAATACAGGCTTGCTCCAGAGCACCCTCTCCCTGCAGCTTACCATGATTCCTGGTTCGCTCTCCAATGGGTCGCATCCCATTCAACCAAAAACACCACCCCCACCCACGTGGAGCCATGGTTGATTGACCATGGTGACTTCAACAGAGTTTTCATAGGAGGGGACAGTTCAGGTGCCAATATGGTGCATAACATAATTGCCTTTCGTGCTGGGGTTGAGCCTTTACCCGGTAATGTCAANATCTCCGGTGCTGTTTTGGCTCACCCTTACTTCTATAGCTCACACCCAATTGGGTCAGAACCTGTTACGGGATTCGACCAGAACTTGTACAATTTGGTTTGGAAATTGGTGTACCCATCAGCACCGGGTGGGATTGATAACCCCTTTATCAACCCTTTGGCTCCTGGGGCACCTGATTTGGCTGCACTTGCGTGTTCTGCTCTTCTTGTTTTTGTTGCTGGTAAGGACGGTTTGAGGGACAGAGGGGTTTGGTACTATGAGGCTGTGAAGAAGAGTGGGTGGAGAGGGAAAATTGAACTCTTTGAAGAGAAAGAGGAGGAACATGACTATCATTTGTATAAGCCAGAGTCTGAGGCTGCCAATGAGATGATCAAACGCATTGCTTCTTTTCTTCTCGAGAATTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00625	20452	21450	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function
GO:0016787 hydrolase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000625s00022683.1	PF07859.8	Abhydrolase_3	83	309	3.60E-40

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.502
SRR1783600	control	0.512
SRR1783602	moderate drought stress	2.358
SRR1811619	moderate drought stress	2.524

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.089
DRR006520	Root Summer glycyrrhizin high producing strain	0.161
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.551
DRR006524	Root Summer glycyrrhizin low producing strain	0.314
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.592
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.603

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.937
SRR2868004	Drought Stress (root)	0.481
SRR2967015	Control (root)	1.304

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.504
SRR9715740	Leaf	1.189
SRR9715741	Leaf	2.718
SRR9715739	Root	0.138
SRR9715742	Root	3.415
SRR9715743	Root	3.179

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.201
SRR8749029	MeJA induced 9h	0.183
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.091
SRR8749032	Uninduced	0.473

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.475
SRR8400027	Control - Root	3.186