Gene detail information of Glyur000624s00026885 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G52220.1 | 9.00E-24 | |
| NR | XP_003548201.1 | 2.24E-80 | PREDICTED: putative uncharacterized protein DDB_G0287975-like [Glycine max] |
| trEMBL | tr|I1MPY4|I1MPY4_SOYBN | 8.00E-81 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA16G31920.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00624 | 88044 | 93433 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000624s00026885.1 | PF09696.5 | Ctf8 | 15 | 113 | 1.00E-22 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.874 |
| SRR1783600 | control | 5.062 |
| SRR1783602 | moderate drought stress | 3.488 |
| SRR1811619 | moderate drought stress | 3.505 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 10.170 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 9.886 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.139 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.207 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.656 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.781 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.134 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.132 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 39.454 |
| SRR2868004 | Drought Stress (root) | 22.197 |
| SRR2967015 | Control (root) | 42.476 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.169 |
| SRR9715740 | Leaf | 0.237 |
| SRR9715741 | Leaf | 3.568 |
| SRR9715739 | Root | 3.265 |
| SRR9715742 | Root | 2.165 |
| SRR9715743 | Root | 2.336 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 60.571 |
| SRR8749028 | MeJA induced 9h | 30.745 |
| SRR8749029 | MeJA induced 9h | 54.341 |
| SRR8749030 | Uninduced | 2.731 |
| SRR8749031 | Uninduced | 2.190 |
| SRR8749032 | Uninduced | 4.124 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 25.179 |
| SRR8400027 | Control - Root | 21.701 |