Gene detail information of Glyur000624s00026883 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G52230.2 | 2.00E-19 | methyl-CPG-binding domain protein 13 |
| NR | KHN31504.1 | 0 | Methyl-CpG-binding domain-containing protein 13 [Glycine soja] |
| Swissprot | tr|Q9LTJ8|MBD13_ARATH | 4.00E-20 | Methyl-CpG-binding domain-containing protein 13 |
| trEMBL | tr|K7MIH7|K7MIH7_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA16G31908.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00624 | 81146 | 86556 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000624s00026883.1 | PF01429.14 | MBD | 8 | 56 | 6.40E-10 |
| Glyur000624s00026883.1 | PF01429.14 | MBD | 103 | 147 | 5.00E-05 |
| Glyur000624s00026883.2 | PF01429.14 | MBD | 8 | 57 | 6.10E-10 |
| Glyur000624s00026883.2 | PF01429.14 | MBD | 75 | 119 | 4.50E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.479 |
| SRR1783600 | control | 6.460 |
| SRR1783602 | moderate drought stress | 8.681 |
| SRR1811619 | moderate drought stress | 8.424 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.343 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.288 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.291 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.913 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.177 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.112 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.947 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.819 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 13.355 |
| SRR2868004 | Drought Stress (root) | 14.017 |
| SRR2967015 | Control (root) | 14.822 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 8.620 |
| SRR9715740 | Leaf | 8.937 |
| SRR9715741 | Leaf | 10.558 |
| SRR9715739 | Root | 0.627 |
| SRR9715742 | Root | 4.807 |
| SRR9715743 | Root | 4.330 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 16.096 |
| SRR8749028 | MeJA induced 9h | 25.896 |
| SRR8749029 | MeJA induced 9h | 19.244 |
| SRR8749030 | Uninduced | 16.031 |
| SRR8749031 | Uninduced | 23.826 |
| SRR8749032 | Uninduced | 20.262 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 16.101 |
| SRR8400027 | Control - Root | 13.999 |