Gene detail

Gene detail information of Glyur000624s00026874

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G48890.1	2.00E-70	membrane-associated progesterone binding protein 3
NR	XP_004515701.1	1.34E-131	PREDICTED: membrane steroid-binding protein 2-like [Cicer arietinum]
Swissprot	tr\|Q9XFM6\|MSBP1_ARATH	8.00E-91	Membrane steroid-binding protein 1
trEMBL	tr\|I3S3C3\|I3S3C3_LOTJA	2.00E-124	Uncharacterized protein {ECO:0000313\|EMBL:AFK34765.1}

Sequence

Transcript Sequence

>Glyur000624s00026874.1
GCGGGATNTGTGTAACAAACACTCTATTTGATGGCGACTTGGCGTTAAACAACAACAAGGTCAAAAGACCAAACCATGGTAAAAGGAGAAAGTAAAAAGACAAGACTAGTAGTTTATAAAAATAAAAATCTCACATTTTTCTNTGTTTACTCTTTCTCTCTCTAGTTTCTCTCTCTAACACCCTCAGAAGAAAGAGAGATAGATGGCTCTCGAACTGTGGTCGACGCTGAAGGAAGCAATAGTTGCCTACACTGGCCTATCCCCACCNACCTTCTTCACCCTCCTCGCCATTCTCTTCGCCATCTACTACATCGTTTCGGGTCTCTTCGGTTCCGACAACAGCAACCGCCATGGAAGCTCGAGGGATTTTGAGACTCAGATGGAGCCTCTGAAACCACCGGTTCAGATCGGTGAGGTAACAGAGGAAGACCTCAAGGCCTACGATGGTTCTGACCCTGAAAAGCCACTCCTTATGGCCATTAAGGGTCAGATCTATGATGTTTCACACAGCAGGATGTTTTATGGACCGGGTGGACCTTATGCTCTATTTGCTGGCAAGGATGCTAGCAGAGCTTTAGCAAAGATGTCTTTTGAAGAGAAAGACCTAACCGGTGATATCTCCGGTCTTAGCGCATTCGAGCTCGAGGCCTTGCAAGACTGGGAATACAAGTTCATGGGCAAGTACGTAAAGGTTGGAACCATAAAAAAGACGACGGTTCCGGTAACCGAACCGGAATCCACCGGTGAACCATCAGAATCTACTACTCCCCATGATGCTGATGCTTCCAAGCCTCATGAAGATGCCCCTTCCAAAACAGATGATAATGCCCCTTCTGAAACTGCTGANGTTAAAAGTGATGAAACCCCTTCAAATGTTGATGCAGATAAAGAGTAGTAATAATGGTTGGGAATAGTTCTGCAAATAATGGAAACAGATATAGGAGCTTGTGAGAGAGACTATGAAACCCNTTTGTGAATGTACTCAGCAAATGTTGGATAATATTAGTCTAGGCCAACCCCTTTNGCACTCGAACTTGGCTTAGATATTTTGTTCAATAAATAATGCAGTGTTTAATTTCAGTTATCTTGGGTTTGAGCTTCCTCTTGTATTCCACAAGATATATGTTACTTATGAGGCTACAAGTGAACATTTGGATATCATCATATACCAAGCCAAGTATTGAAAATGCATTTGGTCTATAGACTCTATACATGGTCTTTTATGATCATTGAATGTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00624	33653	36951	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000624s00026874.1	PF00173.23	Cyt-b5	72	167	3.00E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	175.009
SRR1783600	control	175.701
SRR1783602	moderate drought stress	178.547
SRR1811619	moderate drought stress	177.403

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	242.218
DRR006520	Root Summer glycyrrhizin high producing strain	239.446
DRR006521	Root Winter glycyrrhizin high producing strain	554.367
DRR006522	Root Winter glycyrrhizin high producing strain	541.010
DRR006523	Root Summer glycyrrhizin low producing strain	237.577
DRR006524	Root Summer glycyrrhizin low producing strain	237.691
DRR006525	Leaf Summer glycyrrhizin high producing strain	75.449
DRR006526	Leaf Summer glycyrrhizin high producing strain	75.172

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	160.502
SRR2868004	Drought Stress (root)	176.777
SRR2967015	Control (root)	201.791

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	81.116
SRR9715740	Leaf	85.309
SRR9715741	Leaf	88.238
SRR9715739	Root	107.566
SRR9715742	Root	140.831
SRR9715743	Root	132.263

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	166.503
SRR8749028	MeJA induced 9h	141.351
SRR8749029	MeJA induced 9h	170.681
SRR8749030	Uninduced	165.114
SRR8749031	Uninduced	109.904
SRR8749032	Uninduced	227.729

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	186.028
SRR8400027	Control - Root	159.035