Gene detail

Gene detail information of Glyur000623s00024143

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G55050.1	1.00E-88	GDSL-like Lipase/Acylhydrolase superfamily protein
NR	KHM99548.1	0	GDSL esterase/lipase [Glycine soja]
COG	YP_523580.1	7.00E-19	lipolytic enzyme, G-D-S-L [Albidiferax ferrireducens T118]
Swissprot	tr\|Q9FIA1\|GDL87_ARATH	2.00E-103	GDSL esterase/lipase At5g55050 (Precursor)
trEMBL	tr\|G7IY38\|G7IY38_MEDTR	0	GDSL-like lipase/acylhydrolase {ECO:0000313\|EMBL:AES70380.1}

Sequence

Transcript Sequence

>Glyur000623s00024143.1
ATGGGGAATTCCTTTCTCTTTATCTCTTTCTTCTTCATGTTCAGCTTAGGATTTTCAGAGGCTCAAAAGGCTCCTGCTGTTTATGTGTTTGGAGACTCACTTGTCGATGTTGGCAACAACAATTATTTAAATCTTTCCTTTGAAAAGGCAATTCTTCCTCACTATGGCATTGATTTTCCAACTAAGAAACCATCTGGGAGGTTTAGCAATGGCAAGAATGCTGCAGATTTGATTGCTGAAAAACTTGGCCTACCCACTTCACCACCTTACCTCTCCCTAATATCTAAGGTCAGAAACAGCAACAAGAATGTCTCCTTCTTGGATGGTGTTAACTTTGCCTCTGGAGGTGCTACAATATTTAATGGCACAGATGAAAGTCTTAGGCAATCAATACCTTTGACAAAGCAAGTGGACTACTACTCACAGGTTCATGAACAATTGACACAGCAAATAGGAGCATCTACNCTTCAGAAACACCTCTCAGAATCCATCTTCTTTGTTGTGATTGGCAGCAATGATATCTTTGGTTACTTTAGNTCAATGGATCTTCAAAAGAAAAACACCCCACAACAGTATGCGGATTCCATGGCTTCCTCACTAAAACTGCAACTACAGATTGCTGGTGTTGGTCCAATTGGATGCTGCCCCACATACAGGCTCAAGAACAAAACAGAGTGCTTTTCAGAGGCCAATTTTTTGTCGGTTAAATATAATGAAGACCTTCAATCCATGTTAAAGGAATGGCAATCGAAGAACAAGAACTTAAGTTACTCCTACTTCGATACTTATGATGCCCTCCAAGACCTCATTCAGAATCCAACTTCTTACGGATTTGTAGATGTGAAAGCTGCATGTTGTGGAATTGGAGAGTTGAATGCTGAGCTTCCATGTCTACCGACTTCAAGCGTTTGTTCTAATAGACAAGACCATATCTTTTGGGACCCATTCCATCCTACTGAGGCAGCCACTCGCATCTTTGTGGATAGACTTTTCAATGGACTTTCAAAGGACACATCTCCTATTGATATGGAACAGCTACTAGCTCCTGCTTCTGTCTCTATTGCCAACTCATTTAAGGCTCAAAAGGCTCCTGCTGTTTATGTGTTTGGAGACTCACTTGTTGATGTTGGTAACAACAACTACTTGAGTCTTTCCCTTGCAAAGGCAATTCTTCCTCACTATGGCATTGATTTTCCAACTAAGAAACCCACTGGGAGGTTTAGCAATGGCAAGAATGCTGCAGATTTGATTGCTGAAAAAATAGGCCTGCCAACTTCACCACCTTACCTCTCCCTAATATCTAAGTTCAGAAACAACAACAACAACAACAAGAATGTATCCTTCTTGGATGGTGTTAACTTTGCCTCTGGAGGTGCTGGAATATTTAATGGCACAGATGAAAGTCTTAGGCAATCAATCCCTTTGACAAAACAAGTGGACTACTACTCACAGGTCCATGAACAACTGACACAACAAATAGGAGCATCTACTCTTCAGAAACACCTCTCAAAATCCATCTTTGGTGTTGTGATTGGCAGCAATGATATCTTTGGTTACTTTAACTCAAAGGATCTTCAAAACAAAAACACTCCACAACAATATGCGGATTCCATGGCTTCCTCACTTAAAGTGCAACTACAGAGATTATACAACAAGGGTGCAAGGAAATTTGAGATTGTTGGTGTTGGTGCGATTGGATGCTGCCCCACATACAGGCTAAAGAACAATACAGAATGCTTTTCAGAGGCNAATTTTTTGGCTGTTAAATATAATGAAGACACTCAATCCATGTTAAAGAAATGGAAATCGGAGAACAAGGACTTAAGTTACTCCTACTCTGATACTTATGCTGCCCTCCAAGACCTCATTCAGAATCCAACTTCTTATGGATTTAAAGATGTGAAAGATGCTTGCTGTGGACTTGGTAAGCTGAATGCTGAGTTTCAATGTCTGCCAATTCGAGCGTTTGTTCTAATAGACAAGACCATATCTTTTGGGACCCATTCCATCCTACTGAGGCAGCCACTCGCATCTTTGTGGATAGACTTTTCAATGGACCTTCAAAATACGCGTCTCCTATTAATATGGAACAACTACTAGCTATCTGAATTGTCAAAAAGAGTTATAGAGAAAAAGAAAAGAGTTCTTATGAGACTCTTTCATAGTTGTTCATCGTTCCTAAAAAGTTCATTTAAATTAAGATGAATTGAATTATAGTACATTTTCAAAATAGGATGTGTAATTTGACAAAAAAAAGGACGGTGTAATCTGAATATTTATCAAGAAAAAGGAATGTAATTAAGAAAGAAAGAAAATGAAATCCATTGGCTTTAGATTCATTAATTAATCTCTATAGTAAAAAATACATATTGACCCATAACTCATTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00623	123935	131483	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0016788 hydrolase activity, acting on ester bonds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000623s00024143.1	PF00657.17	Lipase_GDSL	27	329	5.60E-24
Glyur000623s00024143.1	PF00657.17	Lipase_GDSL	366	633	1.60E-22

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.680
SRR1783600	control	0.656
SRR1783602	moderate drought stress	0.801
SRR1811619	moderate drought stress	0.788

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.049
DRR006520	Root Summer glycyrrhizin high producing strain	2.071
DRR006521	Root Winter glycyrrhizin high producing strain	59.808
DRR006522	Root Winter glycyrrhizin high producing strain	57.852
DRR006523	Root Summer glycyrrhizin low producing strain	3.449
DRR006524	Root Summer glycyrrhizin low producing strain	3.717
DRR006525	Leaf Summer glycyrrhizin high producing strain	19.923
DRR006526	Leaf Summer glycyrrhizin high producing strain	19.422

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.863
SRR2868004	Drought Stress (root)	5.307
SRR2967015	Control (root)	4.784

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.963
SRR9715740	Leaf	10.633
SRR9715741	Leaf	9.351
SRR9715739	Root	0.273
SRR9715742	Root	1.421
SRR9715743	Root	0.762

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.542
SRR8749028	MeJA induced 9h	22.221
SRR8749029	MeJA induced 9h	3.930
SRR8749030	Uninduced	10.919
SRR8749031	Uninduced	1.432
SRR8749032	Uninduced	1.121

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.828
SRR8400027	Control - Root	3.639