Gene detail

Gene detail information of Glyur000623s00024142

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G20480.1	8.00E-127	tetraacyldisaccharide 4'-kinase family protein
NR	XP_007146497.1	0	hypothetical protein PHAVU_006G045700g [Phaseolus vulgaris]
COG	YP_003828737.1	9.00E-37	tetraacyldisaccharide 4'-kinase [Acetohalobium arabaticum DSM 5501]
Swissprot	tr\|Q8LEA0\|LPXK_ARATH	3.00E-156	Probable tetraacyldisaccharide 4'-kinase, mitochondrial (Precursor)
trEMBL	tr\|V7BPI3\|V7BPI3_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW18491.1}

Sequence

Transcript Sequence

>Glyur000623s00024142.1
GGTGAACGGCCAATATGATACAAAAAAGGAGAAGGGAAAAACAATGAGTTGATGGAGAAATTGAGAAGAGTGGTGAATGAGATAGCGTATGNGGAGAATCCCCGTAAGCTATCTCCACTTCACCGCTCTCTGCTCCCTTTCCTTTCCATTGCCTCTGCTCTCTATAAACTCGCTCTCTCACTTCGCCACTCCNTTTACCGACACCGCTTCTTTCAAATCCACCGTTTGCCAGTTCCTGTTATCAGCGTCGGGAATTTGACATGGGGAGGCAATGGGAAGACACCCATGGTGGAGTTCATCGCTCTCTGCTTNGCTCGTTCCGGAATTTCACCCCTCCTTCTCTCTCGGGGTTATGGCGGCGGCGATGAAGTTAACATGCTTCAAAGGCATTTTCTTGGAACACCAACCAAGTTTGGTGTTGGCCCAAATCGAGCTGCTGTTGCAAATCAATTTATCCAAAAATATGGCTACATTGATATTCGCAAGAGTTCATGGTATGAGAAACAAAACCGTGATGGGAAGGTCCAGAATTCTCTCGATTCAGAAAAAATTGGGGTTGTAGTTCTTGATGATGCAATGCAGCATTGGAGCTTGTGGCGAGATTTGGATATTGTAATGGTCAACGGATTAACTCTTTGGGGTAACCTTCAACTACTGCCACTTGGACCTTTAAGAGAACCTTTGACTGCACTCAGACGAGCAGATGTAGTTGTAATCCATCATGCAGACTTGGTTTCTGATAGTATTCTCAAGGATATTGAGTCAATGGTACAAGGAATTAAAAAGTCTGTTCCTATTTTCTTCACAAAAATGGATCCAACTTACTTATTTGAGGTGGGAATTATGAATACCAAAATACCATTGACGGCTCTTCATGAAGCTACTATATTATGCGTTTCTGCCATTGGTTCTGCAGAACCTTTTGTGAAGCGGATTCAAGAGATGGGAGCATTTTATGTTGATCGAATAGATTTCAGTGATCATCACATATTCCATTCCAGGGATATTGATTTGATCAGAGCCAGACTTGGAGAACTAGAGGGGAAGTTCGGTTCCAAACCAATTGTTGTAGTAACTGAAAAGGATTATGATAGGGACCCAGAGATTCTCAAGCAATTTTTTCCATTTAAAGTTTATGTTCTCTGTTCTACACTGAAGATTTTGCCCCATAGAGGAAGCACAGAGGATAGCTTTAAGAAATTTCTGAAGGACCATTTGAAATTAGAATTGCCTGCAGCAAATTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00623	119186	121999	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00912	lpxK	EC:2.7.1.130	Lipopolysaccharide biosynthesis	map00540

Gene Ontology

biological_process
GO:0009245 lipid A biosynthetic process

molecular_function

GO:0005524 ATP binding

GO:0009029 tetraacyldisaccharide 4'-kinase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000623s00024142.1	PF02606.9	LpxK	28	388	8.90E-70

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.257
SRR1783600	control	3.202
SRR1783602	moderate drought stress	3.534
SRR1811619	moderate drought stress	3.480

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.338
DRR006520	Root Summer glycyrrhizin high producing strain	3.380
DRR006521	Root Winter glycyrrhizin high producing strain	4.985
DRR006522	Root Winter glycyrrhizin high producing strain	5.038
DRR006523	Root Summer glycyrrhizin low producing strain	2.606
DRR006524	Root Summer glycyrrhizin low producing strain	2.917
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.072
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.125

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.218
SRR2868004	Drought Stress (root)	5.309
SRR2967015	Control (root)	5.184

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.268
SRR9715740	Leaf	5.297
SRR9715741	Leaf	2.791
SRR9715739	Root	1.493
SRR9715742	Root	1.534
SRR9715743	Root	1.094

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	11.080
SRR8749028	MeJA induced 9h	12.522
SRR8749029	MeJA induced 9h	6.959
SRR8749030	Uninduced	5.990
SRR8749031	Uninduced	0.638
SRR8749032	Uninduced	2.330

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.763
SRR8400027	Control - Root	7.071