Gene detail

Gene detail information of Glyur000623s00024140.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G53850.2	2.00E-166	haloacid dehalogenase-like hydrolase family protein
NR	XP_004488728.1	0	PREDICTED: probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1-like [Cicer arietinum]
COG	YP_003268638.1	5.00E-54	methylthioribulose-1-phosphate dehydratase [Haliangium ochraceum DSM 14365]
Swissprot	tr\|B9N1F9\|MTBC_POPTR	0	Enolase-phosphatase E1 {ECO:0000255\|HAMAP-Rule:MF_03118}
trEMBL	tr\|I1LV18\|I1LV18_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA12G35390.1}

Sequence

Transcript Sequence

>Glyur000623s00024140.1
GTCCAGAAAGAAAGAATGGAACCGGAGGACATGTATGTGTTATCCCACAATGGGTCAGTCTTGTCTGCCCCATCTCCCAAACCTTACCCTCATAAGCCTCCCAAGTGTACTGATTGTGATCCACTTTTCATTAAGGCGAGTTTGGCATATGAAAAGCGTGACGCTGGGGCTGTCATCCACAGTCATGGAATAGAATCTTGTCTTGTAACAATGATCAATCCTTTATCAAAGGAATTTCGAATCACTCACATGGAAATGATAAAAGGAATCAAGGGGCATGGTTATCATGATGAACTAGTGGTCCCNATAATTGAGAACACAGCCTATGAATATCAACTCACAGAATCTTTCGCCAAAGCTATTGAAGACTACCCAAAAACAACAGCGGTGCTTGTTCGCAACCATGGGGTATTTATTTGGGGAGACTCATGGATCAGTGCTAAAACTCAGTCTGAGTGTTACCATTATCTCTTTGATGCTGCTATCAAACTTCATCAAATGGGATTGGACTGGTCAACTCCAAATCACGGTGCGATACAAAGTGCAAGAAGGGGTCTAAGTATTGCTGGGGAGTCAAATCTGTCAGTAAAGGCAAGGAAAGCTAGTGGTGAAAACGATCCATTCCAACGTTGCATTGTTCTTGACATCGAAGGAACTACTACTCCCATATCATTTGTTTCAGAAGTTCTCTTCCCATATGCCCGTGATAATGTTGGGAGGCATCTATCTGCAACATATGATACCCCTGAGACTAAAGCTGATATCAAGTTGCTTCGCTCCCAAGTTGAAAGTGACCTTGAACAAGGGATTGCAGGTGCCGTGCCTATCCCTCCAGATGATGCTGGGAAAGAGGAAGTTATTGCTGCTCTAGTTGCTAATGTGGATGCTATGATTAAAGCTGATAGAAAGATCACTGCCTTAAAAGAGTTGCAGGGTCATATATGGCAAACTGGTTATCAGAATAATGAATTGGAGGGGATAGTTTTTGATGATGTACCAGAAGCTCTAGAAAAGTGGCATGCCTTGGGCATAAAGTCTTTATCTGANGTTTGGAGAGTACATTTGCTTGCATTTTCAATTGCTAATTGTGATCTTTTCAACAGGAACAAAAAAGAGACACGGAGTTATGTTGAAATTTCTCAGTCACTTGGTGTTGATAAGCCATCAGATATTTTGTTTGTCACTGATGTATTTCAAGAAGCTACAGCTGCAAAGGCAGCAGGTTTGGAGGTGATAATTTCTATTCGACCTGGAAATGGACCTCTCCCTGAAAATCATGGGTTCAAGACAATCAAATCCTTCTCGGANATCTAAGGAGTTGTTGCAGTCATCTTTGATGACATTAAATGTGTTGTGATACTTGAGGATAATTGTAACGTTCACTTCTCAATATGAAATAATGTGGAGTAGTTCGAATTTCTCAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00623	102148	107738	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K16054	DEP1	EC:4.2.1.109 3.1.3.77	Cysteine and methionine metabolism	map00270

Gene Ontology

biological_process
GO:0019509 L-methionine biosynthetic process from methylthioadenosine

cellular_component
GO:0005737 cytoplasm

molecular_function
GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000623s00024140.1	PF00596.16	Aldolase_II	1	161	2.90E-20
Glyur000623s00024140.1	PF13419.1	HAD_2	212	345	8.60E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	109.390
SRR1783600	control	109.652
SRR1783602	moderate drought stress	162.926
SRR1811619	moderate drought stress	160.234

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	167.091
DRR006520	Root Summer glycyrrhizin high producing strain	162.599
DRR006521	Root Winter glycyrrhizin high producing strain	83.989
DRR006522	Root Winter glycyrrhizin high producing strain	79.516
DRR006523	Root Summer glycyrrhizin low producing strain	156.801
DRR006524	Root Summer glycyrrhizin low producing strain	150.760
DRR006525	Leaf Summer glycyrrhizin high producing strain	95.718
DRR006526	Leaf Summer glycyrrhizin high producing strain	94.098

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	79.890
SRR2868004	Drought Stress (root)	78.926
SRR2967015	Control (root)	81.092

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	82.368
SRR9715740	Leaf	82.359
SRR9715741	Leaf	106.022
SRR9715739	Root	55.391
SRR9715742	Root	114.533
SRR9715743	Root	111.087

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	86.782
SRR8749028	MeJA induced 9h	128.966
SRR8749029	MeJA induced 9h	88.442
SRR8749030	Uninduced	114.218
SRR8749031	Uninduced	80.758
SRR8749032	Uninduced	72.664

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	124.711
SRR8400027	Control - Root	108.731