Gene detail information of Glyur000623s00024138 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G53130.1 | 9.00E-31 | Stigma-specific Stig1 family protein |
| NR | ACU17410.1 | 1.11E-64 | unknown [Glycine max] |
| COG | YP_002494010.1 | 3.00E-06 | hypothetical protein A2cp1_3614 [Anaeromyxobacter dehalogenans 2CP-1] |
| trEMBL | tr|C6T6H8|C6T6H8_SOYBN | 4.00E-65 | Putative uncharacterized protein {ECO:0000313|EMBL:ACU17410.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00623 | 78094 | 78537 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000623s00024138.1 | PF04885.8 | Stig1 | 46 | 147 | 1.50E-28 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 16.463 |
| SRR1783600 | control | 16.297 |
| SRR1783602 | moderate drought stress | 3.491 |
| SRR1811619 | moderate drought stress | 4.467 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.242 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.503 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 21.118 |
| SRR2868004 | Drought Stress (root) | 28.574 |
| SRR2967015 | Control (root) | 18.903 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.079 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.138 |
| SRR9715739 | Root | 0.489 |
| SRR9715742 | Root | 0.931 |
| SRR9715743 | Root | 0.850 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.053 |
| SRR8749028 | MeJA induced 9h | 13.036 |
| SRR8749029 | MeJA induced 9h | 18.982 |
| SRR8749030 | Uninduced | 1.390 |
| SRR8749031 | Uninduced | 0.172 |
| SRR8749032 | Uninduced | 0.128 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 15.581 |
| SRR8400027 | Control - Root | 8.920 |