Gene detail information of Glyur000623s00024130.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G53040.2 | 4.00E-156 | Protein of unknown function (DUF616) |
| NR | KHN28060.1 | 0 | hypothetical protein glysoja_007792 [Glycine soja] |
| trEMBL | tr|K7LWD6|K7LWD6_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G35300.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00623 | 525 | 5912 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GTnc |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000623s00024130.1 | PF04765.8 | DUF616 | 211 | 525 | 1.50E-128 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.142 |
| SRR1783600 | control | 8.169 |
| SRR1783602 | moderate drought stress | 5.680 |
| SRR1811619 | moderate drought stress | 5.738 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.306 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.178 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.667 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.532 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.738 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.783 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.519 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.554 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 15.461 |
| SRR2868004 | Drought Stress (root) | 13.245 |
| SRR2967015 | Control (root) | 13.846 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.415 |
| SRR9715740 | Leaf | 4.889 |
| SRR9715741 | Leaf | 2.929 |
| SRR9715739 | Root | 5.799 |
| SRR9715742 | Root | 6.452 |
| SRR9715743 | Root | 5.441 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 8.222 |
| SRR8749028 | MeJA induced 9h | 9.426 |
| SRR8749029 | MeJA induced 9h | 3.954 |
| SRR8749030 | Uninduced | 2.517 |
| SRR8749031 | Uninduced | 2.171 |
| SRR8749032 | Uninduced | 1.256 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 12.840 |
| SRR8400027 | Control - Root | 13.688 |