Gene detail

Gene detail information of Glyur000622s00032618

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G14270.1	7.00E-79	CAAX amino terminal protease family protein
NR	XP_004516087.1	1.76E-163	PREDICTED: uncharacterized protein LOC101490706 [Cicer arietinum]
COG	YP_007110272.1	4.00E-18	abortive infection protein [Geitlerinema sp. PCC 7407]
trEMBL	tr\|I1KXT8\|I1KXT8_SOYBN	1.00E-161	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G41230.2}

Sequence

Transcript Sequence

>Glyur000622s00032618.1
CTAGCAACTAGCCTTATCCCCTGCTGGCGCTGCATCCAGGTCGTGGGCAGACAAGAGGCTAACTTACAGTTACAGTTAGCACTCATTCAAAATTCTTNTCTGGGAATCAACTGGCTATTCCAATTTCCAAACCCTCCACTCTACATATTAACAATGGTTTCAAACTCAATAGTAGTTGCTTCTTCTCTGTATTCATCGTCACCTTGCACCCTCTTCGATTCCCAGAAACTTTCTTCGCCCAGAACCTTCTCGAGACAAAGCAAGGAATTTCTTCTCAGCAGCCATAGAAACTTGCCCCACCAATTCCGTTTGAGTTTGAGTTCCAAAAGGGGTCTTCCCTCAGTTTGCTTCTTCAGCGCTGGAGACAAATCTGACCCCAACAAGGAATCTGGATTGGAATGGCCTATTCTCAGGCGATGGNAAGTGCCTTGGCAATGGCAAACAGTTTCATTAACTTCTCTTGCTTGTGGTTTGGGTTTTGTGTTGACAGGTTTGGTTGAGGCAACAGCTCTACCATATCTAGGTATTCAACCTGATATGCTAAGTTTAGATGAGAAGGCAGAGTTACTTTTTCTAGATCAAGGTATCACAACTGCTGCTGTACTTGGAATCATATATAGTGTAGCCAACACTTTCCAGCCACTCCCTGAAGACTTTTTCAAATATGATTGGAGGGAACCTTTTAATCTTCAAAAGGGTTGGCTTTTGTGGGCTGGAGTTGGACTTGTTGGTGCCCTTGTTGCCATTGGATTGACAGGAGTTGCTGTCTCCTTCTTTAATGGAGAAACCCCAGAAAGAGAGACTGATGCTCTTGTTCGCTTGCTTCCGTTAATTGGATCTTCAAATGTCAGCACTGCTTGCTTGGTGGGCATCACGGGTGTTCTTGCTCCACTGCTTGAGGAGACTGTATTCCGAGGCTTTTTTATGACTTCCCTAACTAAGGTTCCTACACCAGTTGCTATCATCGTTAGTGCTGCTGTGTTTGCCCTTGCCCATCTCACTCCNGGCGAATTCCCACAGTTATTTGTTCTAGGATACGATATCAAAGAATTGTTGCAGTCAAGTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00622	101642	106555	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0016020 membrane

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000622s00032618.1	PF02517.11	Abi	237	294	3.70E-11
Glyur000622s00032618.2	PF02517.11	Abi	230	287	3.60E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.691
SRR1783600	control	8.682
SRR1783602	moderate drought stress	9.517
SRR1811619	moderate drought stress	9.868

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.061
DRR006520	Root Summer glycyrrhizin high producing strain	9.570
DRR006521	Root Winter glycyrrhizin high producing strain	19.957
DRR006522	Root Winter glycyrrhizin high producing strain	19.623
DRR006523	Root Summer glycyrrhizin low producing strain	10.465
DRR006524	Root Summer glycyrrhizin low producing strain	10.849
DRR006525	Leaf Summer glycyrrhizin high producing strain	55.909
DRR006526	Leaf Summer glycyrrhizin high producing strain	56.304

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	39.182
SRR2868004	Drought Stress (root)	42.836
SRR2967015	Control (root)	50.768

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	36.375
SRR9715740	Leaf	41.886
SRR9715741	Leaf	35.860
SRR9715739	Root	13.671
SRR9715742	Root	8.379
SRR9715743	Root	8.930

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.111
SRR8749028	MeJA induced 9h	5.177
SRR8749029	MeJA induced 9h	2.560
SRR8749030	Uninduced	5.458
SRR8749031	Uninduced	3.583
SRR8749032	Uninduced	2.593

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	30.959
SRR8400027	Control - Root	25.651