Gene detail

Gene detail information of Glyur000620s00017804.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G05010.1	3.00E-38	ethylene-forming enzyme
NR	ACJ84385.1	3.01E-65	unknown [Medicago truncatula]
COG	YP_007565700.1	1.00E-10	putative oxidoreductase [Ilumatobacter coccineus YM16-304]
Swissprot	tr\|Q9MB94\|ACCO_PRUMU	1.00E-58	1-aminocyclopropane-1-carboxylate oxidase
trEMBL	tr\|B7FI06\|B7FI06_MEDTR	1.00E-65	Putative uncharacterized protein {ECO:0000313\|EMBL:ACJ84385.1}

Sequence

Transcript Sequence

>Glyur000620s00017804.1
CTTTGATCTTAAAGGTCTATAAATACCACCCCACATAACACTAATCTGCATAGAGCAAAAACCAACCTACAATATACTTAAAGAGAGAGTCATATACAAAAAGAGTTGAAAGTTAAGAGTTTTGAGAGATGGAGAACTTCCCAGTAATCAGCTTGGACAAGCTCAACGGTGAAGAGAGAAAAACTACTATGGAGAAAATCAAGGATGCTTGTGAGAACTGGGGATTCTTTGAGCTGGTGAATCACGGCATACCCCATGACTTAATGGACACTGTGGAGAGGTTGACCAAAGATCACTACAGGAAATGCATGGAACAAAGGTTCAAGGAATTAGTGGCCACCAAGGGGNTAGAGGGTGTCCAAACTGAGGTCAAAGATATGGATTGGGAGAGCACCTTCTTCTTGCGTCACCTCCCTGAGTCAAACATTTCAGAGGTCCCTGATCTCAGTGATGAGTACAGGAAGACAATGAAGGAATTTGCTTTGAAGTTAGAGAAACTAGCAGAGGAGCTGCTAGACTTGTTATGTGAGAATCTTGGACTANAGAAGGGATACCTCAAAAGGGCCTTCTCTGGATCAAAGGGACCAACTTTTGGCACCAAGGTTGCTAACTACCCTCCATGTCCAAAGCCAGACCTGGTGAAGGGTCTCCGTGCCCACACCGATGCCGGCGGGATTATCCTTCTTTTCCAAGATGACAAGGTCAGTGGCCTTCAGATGCTCAAAGATGGTAACTAGGTAGATGTTCCTCCCATGCACCATTCCATTGTCATCAACCTTGGTGACCAACTTGAGGTAATCACCAATGGTAAGTACAAGAGTGTGGAGCACCGTGTGGTAGCACAAACTGATGGGACCAGAATGTCCATAGCCTCATTCTACAACCCTGGTAGTGATGCTGTTATCTACCCAGCACCAACATTGATAGAGGAGAATAACAATCATGTGTACCCAAAATTTGTGTTTGAGGACTACATGAAGCTCTANGCTGGGTTGAAGTTCCAGGCCAAGGAGCCAAGATTTGAAGCCTTCAAAGAATCAAATGTCAATCTGGGTCCAATTGCAACTGCTTAAATCTGTTTTATTTATCTATAACTATAATGATGTTTGTTTGTTTAAGGAGAACCAAACTAAGCCCAAAAAGAGAGAGAGCTTATGTGCAAGTGCATAAGTTTCTTAAATTAGTATATAGTAATTTATACTATATAGTATATATAATAGTGAGTGAAAGTGAAGTGATTCCTCTGTACTATTATTAAATAGAAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00620	119012	121025	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K05933	E1.14.17.4	EC:1.14.17.4	Cysteine and methionine metabolism	map00270

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0016491 oxidoreductase activity

GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000620s00017804.1	PF03171.15	2OG-FeII_Oxy	4	45	8.00E-12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.153
SRR1783600	control	1.241
SRR1783602	moderate drought stress	2.021
SRR1811619	moderate drought stress	1.993

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.247
DRR006520	Root Summer glycyrrhizin high producing strain	0.169
DRR006521	Root Winter glycyrrhizin high producing strain	0.975
DRR006522	Root Winter glycyrrhizin high producing strain	1.374
DRR006523	Root Summer glycyrrhizin low producing strain	0.299
DRR006524	Root Summer glycyrrhizin low producing strain	0.328
DRR006525	Leaf Summer glycyrrhizin high producing strain	107.570
DRR006526	Leaf Summer glycyrrhizin high producing strain	107.933

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	31.893
SRR2868004	Drought Stress (root)	95.163
SRR2967015	Control (root)	79.915

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	212.434
SRR9715740	Leaf	135.455
SRR9715741	Leaf	187.555
SRR9715739	Root	0.024
SRR9715742	Root	5.995
SRR9715743	Root	4.852

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.388
SRR8749028	MeJA induced 9h	25.758
SRR8749029	MeJA induced 9h	7.958
SRR8749030	Uninduced	703.129
SRR8749031	Uninduced	1311.700
SRR8749032	Uninduced	356.387

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.788
SRR8400027	Control - Root	5.196