Gene detail information of Glyur000620s00017802 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G61700.1 | 1.00E-19 | RNA polymerases N / 8 kDa subunit |
| NR | XP_003517695.1 | 1.08E-24 | PREDICTED: uncharacterized LOC100527000 [Glycine max] |
| COG | YP_008431855.1 | 2.00E-08 | hypothetical protein N186_02290 [Thermofilum sp. 1910b] |
| Swissprot | tr|Q9SYA6|RPBAL_ARATH | 3.00E-25 | DNA-directed RNA polymerase subunit 10-like protein |
| trEMBL | tr|C6T2Z9|C6T2Z9_SOYBN | 4.00E-25 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G03590.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00620 | 112072 | 113437 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000620s00017802.1 | PF01194.12 | RNA_pol_N | 1 | 58 | 7.80E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.164 |
| SRR1783600 | control | 1.168 |
| SRR1783602 | moderate drought stress | 1.797 |
| SRR1811619 | moderate drought stress | 1.590 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.623 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.415 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.142 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.232 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.145 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.402 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.517 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 15.369 |
| SRR2868004 | Drought Stress (root) | 13.711 |
| SRR2967015 | Control (root) | 14.932 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.927 |
| SRR9715740 | Leaf | 10.720 |
| SRR9715741 | Leaf | 6.903 |
| SRR9715739 | Root | 0.748 |
| SRR9715742 | Root | 1.423 |
| SRR9715743 | Root | 1.434 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 12.285 |
| SRR8749028 | MeJA induced 9h | 7.255 |
| SRR8749029 | MeJA induced 9h | 15.009 |
| SRR8749030 | Uninduced | 9.230 |
| SRR8749031 | Uninduced | 9.938 |
| SRR8749032 | Uninduced | 11.833 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 9.626 |
| SRR8400027 | Control - Root | 9.815 |