Gene detail information of Glyur000620s00017801 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G62990.1 | 4.00E-121 | Ubiquitin carboxyl-terminal hydrolase family protein |
| NR | XP_004502174.1 | 0 | PREDICTED: uncharacterized protein LOC101496551 isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q689D6|RPD1_ARATH | 7.00E-29 | Protein ROOT PRIMORDIUM DEFECTIVE 1 |
| trEMBL | tr|A0A072VAL3|A0A072VAL3_MEDTR | 0 | Plant organelle RNA recognition domain protein {ECO:0000313|EMBL:KEH35230.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00620 | 108593 | 110074 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000620s00017801.1 | PF11955.3 | PORR | 58 | 399 | 4.90E-100 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.511 |
| SRR1783600 | control | 1.431 |
| SRR1783602 | moderate drought stress | 2.191 |
| SRR1811619 | moderate drought stress | 1.922 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.064 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.922 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.731 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.481 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.146 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.383 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.372 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.864 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.529 |
| SRR2868004 | Drought Stress (root) | 2.821 |
| SRR2967015 | Control (root) | 3.257 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.129 |
| SRR9715740 | Leaf | 4.594 |
| SRR9715741 | Leaf | 3.317 |
| SRR9715739 | Root | 0.633 |
| SRR9715742 | Root | 1.295 |
| SRR9715743 | Root | 0.523 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.558 |
| SRR8749028 | MeJA induced 9h | 1.377 |
| SRR8749029 | MeJA induced 9h | 1.420 |
| SRR8749030 | Uninduced | 0.429 |
| SRR8749031 | Uninduced | 1.092 |
| SRR8749032 | Uninduced | 0.884 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.901 |
| SRR8400027 | Control - Root | 2.291 |