Gene detail

Gene detail information of Glyur000620s00017799

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT2G32940.1	Argonaute family protein
NR	XP_003541581.2	PREDICTED: protein argonaute 16-like isoform X1 [Glycine max]
Swissprot	tr\|Q6YSJ5\|AGO16_ORYSJ	Protein argonaute 16
trEMBL	tr\|K7M0M5\|K7M0M5_SOYBN	Protein argonaute {ECO:0000256\|RuleBase:RU361178}

Sequence

Transcript Sequence

>Glyur000620s00017799.1
ATGGAGAATGTACCTGGGACTGAAGAAGCTGCTGAGCCACCACCATCCCCTCCTGATGTGCTGACTAATATTGAAACAGAACAAATAGCTCCTTCAAAATATTCTATTATTAGTAGGCCAGGTGTTGGGACCTCAGGAAAACGCATACCTTTGCTTGCCAATCTCTTCAAAGTTGCTGCTAATGCCCNGGATACAATTTTTTTCCAGTATAGTGTTACTATTGCTTCGGAAGATAAAAGAGCCGTTGAAAGCAAGGGCATTGGGAGAAAACTGATTGATAGGCTTTACCAAACATACTCTTCTGAACTTGGTGGCAAAAGGTTTGCGTATGATGGAGAGAGAACTTTGTACACAGTTGGTCCTCTGCCGCATAATAAATTTGAGTTCAAAGTATTGCTTGAGGAATCATTTGCAAAGTGTAGTGCCGAGAGTCCTGGTGCTAATGGAAGCCCTCGTGAGGAATCTAAAAGATCAAAACGTTCTTTTCAGTCAAAGGTGTTTATGGTGGAGATAAGTTTTGCTGNCAAAATACCTCTGCAGTCCATTGCTCTTTCCCTAAAAGGAATTGAGTCAGATGCTAATTCTCAGGATGCATTGAGAGTTCTTGATATTGTACTCAGGCAGNGAGCAGCTAACAGAGGGTGTCTCTTGGTAAGGCAATCTTTTTTTCATGATGACTCGAGGAATTTCAATGATGTTGGAGGTGGAGTAACAGGAGTTCGGGGTTTTCATTCCAGTTTTCGTCTTACGCAGGGAGGACTTTCTCTCAATATGGATGTGTCCACAACGATGATTGTAAAACCTGGACCTGTAATTGATTTTCTCCTATCCAACCAGAATGTGAGGGAACCCCGTTATATTGACTGGGCAAAGGCTAAAAGAATGCTTAAAAATTTAAGGGTACATGCAACACATCGTAACCAGGAATTTAAAATTTCTGGCTTGAGTGAGAAACCCTGCATTCAACAACTTTTTAGTATGAAGGTGAAAAATGGAGACAACAATAACGGAGAGCAGACNGTGGATATTACAGTATATGAGTATTTTGCTAAACACCGTGGCATTGAGCTGACCTCTTCTGCTTATCTTCCATGTCTTGATGTCGGGAAGCCAAAACGGCCCAACTATTTGCCCTTGGAGGTTTGCCGAATTTTATGCTTGACTGAACTTTGTTCTGGTTCTTATTTTATACCACGGTATACAAAAGCATTATCTCCAAAGCAAAGAGCATCTTTAGTTGAGAATTCACGCCAGAAGCCTCAAGAGAGAATCAAAATTCTGACAAATGCTGTAGGAAATTATTGCTATGATGATGATCCTATTCTTGCGGCATGTGGCATTTCTATTGACAAGCAATTAACTGAGCTTGAAGGNCGGGTTCTTGAGACACCAAAGTTGAAGGTTGGTAAGAATGAGGATTGCTTCCCCAATAATGGAAAGTGGAACTTTAAGAACAAGACACTTCTACAACCATCACANATTGATTTTTGGGCTGTTGTCAACTTTTCTGCAAGTTGTGACACCAGTTACCTAACAAGGGAGCTAATCAAATGTGGAATGAGCAAGGGCATTAACATTGAACGGCCATATACTTTAATAGAGGAAGAACCACAGTTGAGAAGATCTAACCCTNTTGCAAGGGTTGAAAGGATGTTTGACCTGCTTACATCAAAACTTATTAAAGAACCAAAGTTGATTCTTTGTGTCTTGCCAGAGAAGAAAAATTGTGACATCTATGGGCCTTGGAAAAAGAAATGTCTGAGTGAATTTGGTGTTGTCACACAGTGCATTTCCCCTACCAAGATTACTGATCAATACCTTACTAATGTACTTCTTAAAATTAATTCCAAGCTTGGAGGAATAAATTCTTTNCTGACAATAGAGCATTCTGGGCATCTTCCCCTGATTAAAGATACCCCAACAATGATTTTAGGGATGGATGTCTCTCATGGTTCCCCTGGTCGGTCAGATATTCCNTCAGTAGCAGCAGTTGTTGGATCTCGACGTTGGCCTTTGATTTCAAGGTATAGAGCATCTGTCAGAACGCAGTCATCTAAGGTGGAGATGATTGACGCTCTATACAAGCCTTTGGATGATGAGAATGATGATGGTATTATCAGGGAATTGCTTCTAGATTTCTATGAATCAAGTAAAGGACGCAAACCAACTCAAATTATTGTCTTCAGGTGTCATTCTATCNCTGTTCTGTTTGATAGAAGTCCAGTCACAGATGGAGTTAGTGAATCACAATTTAAACAGGTTTTGGACATTGAGATTAACCAGATAATAAAGGCCTATCAACATCTTGGGGAGGTTGATGTTCCCAAGTTCACTGTAATTGTGGCACAGAAGAATCATCATGCAAAGCTTTTTCAAGCTAATGCTTTGGAAAATGTTCCTCCTGGGACAGTTGTCGACACAAAAATCGTGCATCCAAGAAATTATGATTTCTACATNTGTGCTCATGCTGGAACGCTTGGAACATCTAGGCCTGTACATTATCATGTGTTGCTTGATGAGATCGGTTTCTCGCCAGATGGCTTGCAAAATCTGATCCATTCACTTTCTTATGTGAACCAAAGGAGCACAACTGCAACCTCAATTGTGGCACCTATATGCTATGCCCACCATGCTGCAGCTCAGATGGGACAATTTCTGAATTTTGATGATTTATCAGAAACATCTTCAAGTCATGCTTCAGAGGGAAACGTCCCCATTCCAGAGCTTCCAAAGTTGCATAAGAATGTCAAGAGTTCCATGTTCTTCTGTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00620	95202	101400	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003676 nucleic acid binding

GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000620s00017799.1	PF08699.5	DUF1785	217	268	1.90E-17
Glyur000620s00017799.1	PF02170.17	PAZ	270	388	3.10E-25
Glyur000620s00017799.1	PF02171.12	Piwi	565	886	2.70E-92

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.128
SRR1783600	control	2.195
SRR1783602	moderate drought stress	1.592
SRR1811619	moderate drought stress	1.584

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.259
DRR006520	Root Summer glycyrrhizin high producing strain	2.291
DRR006521	Root Winter glycyrrhizin high producing strain	0.593
DRR006522	Root Winter glycyrrhizin high producing strain	0.533
DRR006523	Root Summer glycyrrhizin low producing strain	1.993
DRR006524	Root Summer glycyrrhizin low producing strain	2.073
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.853
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.952

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.956
SRR2868004	Drought Stress (root)	3.447
SRR2967015	Control (root)	3.727

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.692
SRR9715740	Leaf	0.443
SRR9715741	Leaf	0.476
SRR9715739	Root	0.150
SRR9715742	Root	0.985
SRR9715743	Root	1.006

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	10.350
SRR8749028	MeJA induced 9h	9.976
SRR8749029	MeJA induced 9h	6.693
SRR8749030	Uninduced	1.655
SRR8749031	Uninduced	1.088
SRR8749032	Uninduced	1.029

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.465
SRR8400027	Control - Root	4.511