Gene detail

Gene detail information of Glyur000620s00017798

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G01630.1	BRCA2-like B
NR	XP_004502181.1	PREDICTED: uncharacterized protein LOC101498291 [Cicer arietinum]
Swissprot	tr\|Q7Y1C4\|BRC2B_ARATH	Protein BREAST CANCER SUSCEPTIBILITY 2 homolog B
trEMBL	tr\|G7J9J4\|G7J9J4_MEDTR	Breast cancer type 2 susceptibility protein {ECO:0000313\|EMBL:AES71833.2}

Sequence

Transcript Sequence

>Glyur000620s00017798.1
ATGCAATGCGAAGAAGAGAAGAAGAGAATGTCGACATGGCAGATACTCTCCGACGCCGAAAACAATTACCGCTGGGAGAGGGAGAGGGAGAGGGAGAGGGAGAGGGAGAGGGAAGTCACCACCACCACACACAACACTCCAAATGCCACACCTTTCTCCCACATTCCCACCTCTCCCCTCCCCTCATTCTCCGATCTCCTCCTCCATGCTTCCACTCTACACCACCTTTTCCCTCTCCCATCTCAAGAGGAAGAGAACGCGATAGATGATAATACTAGAAGCTTCTCGAATTCTCTTTTCAAGACAGGCTCTGGAAGAAAAGTCACCATCTCTCCCAACGGTCTCGTTAGAGCAAAGACGTTACTTGGACTCAACGAAGATCTCCAATTCAAAACCCCTCACCGTGATGCTGCAACAACTGTCGATGATGAAACACCGCCTTATTTACAGCTACATAACAATAAGGTCATGGAAAGTAGTTATAAGATGACGATGATGAATGGTTTTTTTGAAAATAATAATAAAGTTTTGCAACCATCAGATATAGTACTAGGTAGTGCTGGTTGTGTTGGTGTTGGTGTTGCTGCTAAGCAGGCTCCGATTAAATTCAGCACTGCTGGGGGAAGGTCTATATCGATTTCCAGTGATGCATTGCAACGTGCTAGGAGCCTTCTTGGTGACCCTGACCTCGGAGATTTCTTCGATGATGCCACAGGCCACATTGGTGGTGGTGATTCGGTTTTCTCATTTCCGAATAAGAGACAAGCCTGTGAAACAAGTGATTGTAGTAATAATACTCCTAACACTCCTTTGNTACAACAACAAGTGACACCACAGAGCAATCACAGGGCAAAAGGTTTCACATGCCCTTTGCTACCTTCTAGACAGATGGAATTTTCAACCAAGTTTCTTTGTGAGGGTAGTAATGGGAATAACTTGATCATGAAATTTGATGATGTTGGGAATGAAAGGGATTGTTATAGCCGGAAAAGTAAAANCACTGGTGGTGGACAGAAACCTTTATTACATGACAGGAAGGAAGTGCCGGAAGACTCAACAGCGTGTCGTTCTTCATTGAATGGTTTTTCATCGAGAAAAGATTCGCNTGGAGTGCCATTAGGCAGGCCATTGGCTGATATTACCAATGCCATTAACACGGTACATACAAACAATAGACAGCCTGCTAGTGGAAAAAGGAGACTAGGATTGCGTGCAACTGTTTCTCCCTTNAAAAGGCCTCGTGGTTCCAAAATTTCTTCTGCCCTTGTTGACCAAGATGTNGAAAATTTTCCCAATGATCTGTCTCAATTATCCTCTGGTGCTTCTGGATGCAAAAGAAAGGTTTCTACCCGATATCCATTTCGGTATCCGAGGATGCACATCAAGGAGTTTTTTGCAGTGGCTCCATTAGAGCAGAAAGTGCATTTTCCCAGCCCAGTCAGACAGGTGACATCAGGTAATGCAGAAAAGTACATGTTCCATGACGGGTCTGATGATAACGGAGTGGGAGCAGAAGCCTTTGTCCATCTATTGGAACAGCATGGGGCTTCCATGCATTTTGCTTCTAAAGAGTGGGTCTTGAATCATTACAAGTGGATTGTCTGGAAACTGGCATGCTATGAGCGATGCTATCCGGCTAGGTGTGCTGGAAANTTTTTGACTGTATCAAATGTGCTTGAGGAACTGAAGTACAGATATGAAAGAGAAGTGAATCATGGCCACCGGTCTACCATCAAGAAAATTCTTGAAGGGGATGCATCGCCTTCTTCAATGATGACCCTCTGCATTTCTAGCATTCACTCTGATCATGTACTTGAAAGTGGGACATTTTCTGAGACACAAACTGGGGATCAGAGCAGGGAGACAGTAAAAGTTGAACTGACTGATGGATGGTATTCCATAAATGCCATTTTAGATGATCCATTGTCAAAGCAGCGAGCTTCTGGAAGATTGTTTGTAGGACAGAAGCTTCGGATCTGGGGAGCAGGATTAAGTGGCTGGAATGGGCCAGTTTCACCCCTTGAGGTGTCATCAACGGTTAGTTTATTGCTGCACATAAATGGAACATATAGAGCTCATTGGGCAGAGCGGTTAGGATTTTGTAAAGTTGCTGGTCCACCTTTGGCTTTCAGATGCATAAAAAGCAATGGTGGTTTAATACCTCAAACTTTGGCAGGAATTACCCGCATATATCCTATTCTTTACAAGGAAAGGTTAAGCAGTGGACGGTCGGTTGTCATATCAGAGAGGATGGAGGATAAAATGATGGATCTGTACAATCAGAGACGCTCAGCTGTTGTAGATGGCATCATTTCGGAGTATCAGAAGGAAAGAAGAGGTTCCCGTATTTATGANGATGGCAATAGTGAAGGGGCTAAGATTTATAAAATGCTGGAGACAGCTGCGGAACCNGAATTCCTAATGGCAGATATGAGTCCAGAGCAGCTTAGTTCTTTTTCTGCTTATAAGGCCAAGTTAAATGCAATCAGACAGNCAGAAATGGAAAGTTCAATTGAGAAAGCTTTGGAAGATGCTGGTTTGAAACATAGAGAAGTCACACCATTTCTGCGGTTGCGGGTAGTTGGATTAACTTATAAAACTCGACAAGACAAGCCTAAAGAAGGCATAATAACAATCTGGAACCCAACGGAGAAGCAGCGTCAGGAGCTGGTAGAGGGAGAAGCATATGCAATTGCAGGACTCATACCATCAGGTTCTGATTTGGATATCCTTCACTTGCAGACTAGAGGATCTTCTACCATGTGGTTGCCTTTATCTTCCGATACAAGGCAACAGTTTAATCGAAAATCAATCCAATTGTCAAGTTTGAGTGACATCCCTCTTTCCAATGAGTTCGATATTGCTGCATTTGTTGTGCANGTGGGAGAGGTTTACACATCAAGTCAGCAAAAGAAGCAATGGGTTTTTGTGACTGATGGATCCATCATGTGTGGTTTACAGTCAGAAAAGTTAATCAACAATTTGCTTGCCATCTGCTTTTGCTCCCCATCGGTTGATCATGCTTCATTTCCACCAATCAACTATAACCTTGCTGGATCTACGGTTGGTTTCTGTAATCTTATAAAAAAGGCAAAGGACCATACAAATCATATCTGGGTTGCTGATGCTAATGAAAATTCAGCCTATTATTTGAATTTTGATTCCCAGCACTGTTCTCACCTCAGAAACGCTGCCAGCTCCGTCAGAAGATGGGCAAGCNATTCTAGCTTGATAATAGAGAAACTCAAGGAAAAGGTGTTATGTATAGTTGGTGATTGTAAAGCCTAG

Protein Sequence

>Glyur000620s00017798.1
MQCEEEKKRMSTWQILSDAENNYRWEREREREREREREVTTTTHNTPNATPFSHIPTSPLPSFSDLLLHASTLHHLFPLPSQEEENAIDDNTRSFSNSLFKTGSGRKVTISPNGLVRAKTLLGLNEDLQFKTPHRDAATTVDDETPPYLQLHNNKVMESSYKMTMMNGFFENNNKVLQPSDIVLGSAGCVGVGVAAKQAPIKFSTAGGRSISISSDALQRARSLLGDPDLGDFFDDATGHIGGGDSVFSFPNKRQACETSDCSNNTPNTPLXQQQVTPQSNHRAKGFTCPLLPSRQMEFSTKFLCEGSNGNNLIMKFDDVGNERDCYSRKSKXTGGGQKPLLHDRKEVPEDSTACRSSLNGFSSRKDSXGVPLGRPLADITNAINTVHTNNRQPASGKRRLGLRATVSPXKRPRGSKISSALVDQDVENFPNDLSQLSSGASGCKRKVSTRYPFRYPRMHIKEFFAVAPLEQKVHFPSPVRQVTSGNAEKYMFHDGSDDNGVGAEAFVHLLEQHGASMHFASKEWVLNHYKWIVWKLACYERCYPARCAGXFLTVSNVLEELKYRYEREVNHGHRSTIKKILEGDASPSSMMTLCISSIHSDHVLESGTFSETQTGDQSRETVKVELTDGWYSINAILDDPLSKQRASGRLFVGQKLRIWGAGLSGWNGPVSPLEVSSTVSLLLHINGTYRAHWAERLGFCKVAGPPLAFRCIKSNGGLIPQTLAGITRIYPILYKERLSSGRSVVISERMEDKMMDLYNQRRSAVVDGIISEYQKERRGSRIYXDGNSEGAKIYKMLETAAEPEFLMADMSPEQLSSFSAYKAKLNAIRQXEMESSIEKALEDAGLKHREVTPFLRLRVVGLTYKTRQDKPKEGIITIWNPTEKQRQELVEGEAYAIAGLIPSGSDLDILHLQTRGSSTMWLPLSSDTRQQFNRKSIQLSSLSDIPLSNEFDIAAFVVXVGEVYTSSQQKKQWVFVTDGSIMCGLQSEKLINNLLAICFCSPSVDHASFPPINYNLAGSTVGFCNLIKKAKDHTNHIWVADANENSAYYLNFDSQHCSHLRNAASSVRRWASXSSLIIEKLKEKVLCIVGDCKA

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00620	86333	92803	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0000724 double-strand break repair via homologous recombination

GO:0006281 DNA repair

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000620s00017798.1	PF00634.13	BRCA2	199	229	4.40E-07
Glyur000620s00017798.1	PF09169.5	BRCA-2_helical	501	571	5.50E-16
Glyur000620s00017798.1	PF09103.5	BRCA-2_OB1	576	703	2.60E-41

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.953
SRR1783600	control	1.900
SRR1783602	moderate drought stress	0.471
SRR1811619	moderate drought stress	0.393

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.906
DRR006520	Root Summer glycyrrhizin high producing strain	0.756
DRR006521	Root Winter glycyrrhizin high producing strain	0.135
DRR006522	Root Winter glycyrrhizin high producing strain	0.165
DRR006523	Root Summer glycyrrhizin low producing strain	0.468
DRR006524	Root Summer glycyrrhizin low producing strain	0.530
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.197
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.169

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.041
SRR2868004	Drought Stress (root)	2.430
SRR2967015	Control (root)	2.387

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.562
SRR9715740	Leaf	0.044
SRR9715741	Leaf	0.119
SRR9715739	Root	0.199
SRR9715742	Root	0.350
SRR9715743	Root	0.572

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.461
SRR8749028	MeJA induced 9h	4.404
SRR8749029	MeJA induced 9h	3.535
SRR8749030	Uninduced	0.291
SRR8749031	Uninduced	0.105
SRR8749032	Uninduced	0.202

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.002
SRR8400027	Control - Root	3.981