Gene detail

Gene detail information of Glyur000620s00017794

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G04842.1	0	threonyl-tRNA synthetase, putative / threonine--tRNA ligase, putative
NR	AES71826.2	0	threonyl-tRNA synthetase/threonine-tRNA ligase, putative [Medicago truncatula]
COG	YP_007055352.1	0	threonyl-tRNA synthetase [Rivularia sp. PCC 7116]
Swissprot	tr\|O04630\|SYTM_ARATH	1.00E-123	Threonine--tRNA ligase, mitochondrial (Precursor)
trEMBL	tr\|G7J9I7\|G7J9I7_MEDTR	0	Threonyl-tRNA synthetase/threonine-tRNA ligase, putative {ECO:0000313\|EMBL:AES71826.2}

Sequence

Transcript Sequence

>Glyur000620s00017794.1
CAAAATCCACAAAACCAAACATATCTNGTGCCATACAGATTGGATGAGGGTGGAGGCCTTCCAACTCCAACTGAGTCCTTCACTCACGCTTTGACATTCCTTCTCGCGTGTTTCTTCTTCAATCCACACCCAAAATGGCCAGCTTCACCGTTGCTGCTGCCATGCCCACAACCACAGCTTTATCCCCAACAACACCTTCATTATCCTCTTCTCCTTTCCTCAATAAGCTCCATAGACCCCTCCTCTCTCCAAGTCCAACCCCCTTCAACTTCAACTTCAACTTCAACAGAAAATGCCTCACCCTCGCTGTCGCCACCCGTTCCTCCCAACCCCCCGTGGTTTCCGACAGCAACGACCGAGTTGTTCTCCCAACTAACGAATCTTCCGACAGGCTNCTCAGAATCCGCCACACGTGTGCGCATGTGATGGCAATGGCTGTTCAAAAGCTTTACNCCGAAGCAAAAGTCACAATTGGGCCTTGGATAGAAAATGGGTTTTATTANGACTTTGATATGGAGCCTTTGACTGATAAAGATTTGAAGAGAATCAAGAAAGAGATGGATCGAATTATTGGCAAAAATTTGCCCCTTGTAAGAGAAGAAGTTTCGAGAGATGAAGCTCAGAGAAGAATATCAGCTTTGAATGAACCATACAAGATGGAGATTTTGGAAAGCATCAAGGAAGATCCCATCACAATTTATCATATCGGAGAGGAATGGTGGGACCTGTGTGCTGGGCCTCATGTTGAATCTACTGGAAATATTAACAAAAAAGCGGTTGAACTTGAGTCTATTGCTGGTGCTTATTGGAGAGGAGATGAAAGGAAACCAATGTTGCAAAGGATATATGGTACCGCATGGGAGAATGAAGAGCAGTTGAAAGCTTACCTTCACTTTAAAGAAGAAGCTAAACGTCGNGATCACAGGCGCCTAGGGCAAGATCTTGATTTGTTTTCTATACAGGATGATGCTGGTGGGGGTTTAGTTTTCTGGCACCCTAAGGGTGCTATTGTGAGACACATAATTGAAGATTTTTGGAAAAAAGTTCACATAGAACGTGGTTATGATCTACTGTACACACCCCATGTGGCAAAAGCTGATCTTTGGAAGATCAGTGGTCATTTGGACTTCTACAAAGAGAACATGTATGATCAGATAAGCATCGAAGATGAGCTTTATCAACTTCGACCAATGAATTGTCCTTATCATATTTTGGTATACAAAAGGAAGCTTCATTCGTATCGGGATTTTCCTATTAGGGTAGCAGAATTGGGCACTGTTTATAGATATGAACTGTCTGGAACTTTACATGGCCTTTTCCGTGTTAGAGGTTTCACCCAGGATGATGCACACATTTTTTGTTTAGATGACCAGATTAAAGATGAGATCAGAGGTGTCCTGGATCTTACNGAAGAAATATTGTCGCAATTTGGTTTTGACAAGTATGAAATAAATTTATCTACAAGGCCTGAAAAAGCTGTTGGAGATGATGATATATGGGAGAAAGCTACCTCTGCTTTAAAAGATGCTTTGGATGATAAAGGTTGGGCCTATCAGATTGATGANGGGGGAGGTGCCTTTTATGGGCCNAAGATTGATGTTGATTTTAATTTACCACAGCGTTTTGACATCACATATGTTGACTCAAACACTGAGAAAAGGAGACCTATAATGATCCATAGAGCAGTGCTTGGATCCTTGGAAAGATTCTTTGGCGTTCTCATAGAGAATTATGCGGGTGATTTTCCATTATGGCTTTCTCCAATACAAGCTCGGGTTTTACCTGTTACTGATGGCCAGCTTGAATACTGCAACGAAGTGACCAACAAACTGAAGATGTATGGCATCCGAGCCGAAGTTTGTCACGGAGAGCGCCTGCCGAAGCTCATAAGAAACGCGGAGAAGCAGAAAATTCCATTGATGGCTGTTGTGGGCTCAAAGGAAGTCGAAACACAAACGGTTACAGTTAGGTCTAGGTTTGGTGGGGAGCTTGGAACCATGTCAGTTGATGATTTTATCAGCAGAATAAAGTTGGCAATAGAAAACCCAACATCNTCATTATGATATATTTTTTCCATTGGCAAAAATTGGCCATCCTATTTACTAGTAACTTATGCTATCAGTTTGGAGAAAGACATTTGATTTGAAACAGCATATTTTGTATATTACACAACAATTATTAAATCAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00620	64589	69977	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01868	TARS, thrS	EC:6.1.1.3	Aminoacyl-tRNA biosynthesis	map00970

Gene Ontology

biological_process

GO:0006418 tRNA aminoacylation for protein translation

GO:0006435 threonyl-tRNA aminoacylation

GO:0043039 tRNA aminoacylation

cellular_component
GO:0005737 cytoplasm

molecular_function

GO:0000166 nucleotide binding

GO:0004812 aminoacyl-tRNA ligase activity

GO:0004829 threonine-tRNA ligase activity

GO:0005524 ATP binding

GO:0016876 ligase activity, forming aminoacyl-tRNA and related compounds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000620s00017794.1	PF07973.9	tRNA_SAD	186	238	1.90E-12
Glyur000620s00017794.1	PF00587.20	tRNA-synt_2b	294	457	2.30E-45
Glyur000620s00017794.1	PF03129.15	HGTP_anticodon	545	632	1.90E-17

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.452
SRR1783600	control	4.632
SRR1783602	moderate drought stress	4.916
SRR1811619	moderate drought stress	4.944

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.067
DRR006520	Root Summer glycyrrhizin high producing strain	6.118
DRR006521	Root Winter glycyrrhizin high producing strain	8.427
DRR006522	Root Winter glycyrrhizin high producing strain	8.487
DRR006523	Root Summer glycyrrhizin low producing strain	8.093
DRR006524	Root Summer glycyrrhizin low producing strain	8.079
DRR006525	Leaf Summer glycyrrhizin high producing strain	61.681
DRR006526	Leaf Summer glycyrrhizin high producing strain	60.586

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	13.400
SRR2868004	Drought Stress (root)	18.606
SRR2967015	Control (root)	22.268

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	42.305
SRR9715740	Leaf	77.285
SRR9715741	Leaf	47.538
SRR9715739	Root	0.876
SRR9715742	Root	3.961
SRR9715743	Root	3.336

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	9.329
SRR8749028	MeJA induced 9h	17.055
SRR8749029	MeJA induced 9h	8.793
SRR8749030	Uninduced	12.920
SRR8749031	Uninduced	9.228
SRR8749032	Uninduced	6.360

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	13.453
SRR8400027	Control - Root	11.840