Gene detail information of Glyur000620s00017789.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G04740.1 | 0 | ankyrin repeat family protein |
| NR | XP_004502161.1 | 0 | PREDICTED: BTB/POZ domain-containing protein At2g04740-like [Cicer arietinum] |
| COG | NP_285580.1 | 7.00E-06 | ankyrin-like protein [Deinococcus radiodurans R1] |
| Swissprot | tr|Q9SJ85|Y2474_ARATH | 0 | BTB/POZ domain-containing protein At2g04740 |
| trEMBL | tr|A0A072UZJ2|A0A072UZJ2_MEDTR | 0 | Ankyrin repeat and BTB/POZ domain protein {ECO:0000313|EMBL:KEH35224.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00620 | 43035 | 47953 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | TRAF |
| Ubiquitin Family | BTB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000620s00017789.1 | PF12796.2 | Ank_2 | 32 | 84 | 6.70E-09 |
| Glyur000620s00017789.1 | PF00651.26 | BTB | 133 | 232 | 1.10E-17 |
| Glyur000620s00017789.1 | PF00651.26 | BTB | 305 | 411 | 9.00E-17 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.077 |
| SRR1783600 | control | 3.030 |
| SRR1783602 | moderate drought stress | 3.751 |
| SRR1811619 | moderate drought stress | 3.787 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.976 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.886 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 10.146 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.110 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.311 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.263 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.297 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.234 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.299 |
| SRR2868004 | Drought Stress (root) | 7.320 |
| SRR2967015 | Control (root) | 9.027 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.334 |
| SRR9715740 | Leaf | 5.523 |
| SRR9715741 | Leaf | 7.747 |
| SRR9715739 | Root | 0.593 |
| SRR9715742 | Root | 3.455 |
| SRR9715743 | Root | 3.192 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.575 |
| SRR8749028 | MeJA induced 9h | 6.277 |
| SRR8749029 | MeJA induced 9h | 3.396 |
| SRR8749030 | Uninduced | 2.132 |
| SRR8749031 | Uninduced | 0.720 |
| SRR8749032 | Uninduced | 0.942 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.931 |
| SRR8400027 | Control - Root | 5.937 |