Gene detail information of Glyur000620s00017785 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G35690.1 | 7.00E-74 | |
| NR | XP_003601543.1 | 0 | Ubiquitin and WLM domain-containing protein [Medicago truncatula] |
| trEMBL | tr|A0A072V087|A0A072V087_MEDTR | 0 | Zinc metalloproteinase-like protein, putative {ECO:0000313|EMBL:KEH35222.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00620 | 30341 | 36007 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000620s00017785.1 | PF08325.5 | WLM | 79 | 251 | 3.00E-39 |
| Glyur000620s00017785.1 | PF09409.5 | PUB | 471 | 553 | 4.70E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 26.201 |
| SRR1783600 | control | 26.146 |
| SRR1783602 | moderate drought stress | 34.001 |
| SRR1811619 | moderate drought stress | 32.884 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 42.647 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 41.522 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 39.553 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 38.404 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 36.914 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 37.513 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 25.377 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 25.204 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 49.470 |
| SRR2868004 | Drought Stress (root) | 74.666 |
| SRR2967015 | Control (root) | 71.604 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 24.990 |
| SRR9715740 | Leaf | 29.685 |
| SRR9715741 | Leaf | 33.610 |
| SRR9715739 | Root | 4.546 |
| SRR9715742 | Root | 14.050 |
| SRR9715743 | Root | 12.746 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 69.571 |
| SRR8749028 | MeJA induced 9h | 125.538 |
| SRR8749029 | MeJA induced 9h | 96.813 |
| SRR8749030 | Uninduced | 98.682 |
| SRR8749031 | Uninduced | 123.363 |
| SRR8749032 | Uninduced | 80.579 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 48.689 |
| SRR8400027 | Control - Root | 46.329 |