Gene detail

Gene detail information of Glyur000620s00017778

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G47650.1	2.00E-86	nudix hydrolase homolog 2
NR	XP_004502189.1	2.56E-180	PREDICTED: nudix hydrolase 2-like [Cicer arietinum]
COG	YP_944432.1	1.00E-36	ADP-ribose pyrophosphatase [Psychromonas ingrahamii 37]
Swissprot	tr\|Q94B74\|NUDT2_ARATH	3.00E-109	Nudix hydrolase 2
trEMBL	tr\|G7J8V6\|G7J8V6_MEDTR	1.00E-175	Nudix family hydrolase {ECO:0000313\|EMBL:AES71787.2}

Sequence

Transcript Sequence

>Glyur000620s00017778.1
TAATAATTGTGTTTTGTTATTATTCTCTTCTGTGTTGATCACGTTTGATTTTCATAATGATGATGAGGTTTAGAGCTAGCAAGCTTTATTCTTCCTGCCTTTTAGCAAGTACTTCTAAATTGTTCCTCACATCTTCTGCTTCTGTCCCTCCACTTCAAGTTAAGGCTTTACATGGCTCTATCATCCCCCAATCTCAAGTGAGAGGTGAAGGCGTTGGATTACTCAGAGCAGTTGAGGACCAACATGGGGGAGTTATTGTAAACATGGAGGAGCCTATGGATTCCTTGGTTTTTGCTTCTATGTTAGAAGCTTCAATATCACAATGGAGGAAAAAGGGCAAGAAGGGAGTGTGGATCAAGTTGCCCAGAGAACATTCAAATCTTGTGGCCTCTGCAGTTGAGGCTGGATTCAAGTACCATCATGCTGAACCAGATTACTTGATGCTTGTGCACTGGATTCCCAATACTCCTGATACCCTTCCTGCAAATGCTTCACACCGCGTTAATATTGGTGCTTTTGTAATGAATACCAATAAGGAGGTCCTTGTGGTTCAGGAAAGCAATGGGAGATTCAGTGGCAAAGGAATATGGAAATTGCCTACTGGAGGTGTTAATGAAGGTGAGGATATTTGTACTGCTGCTATTAGAGAAGTCAAAGAAGAGACNGGGATCGAAACTGAGTTTGTTGAGGTTTTAGCATTCAGGGAAAGCCATAAATCTTTCTTCCAAAAGTCACAGTTGTTCTTTGTCTGCATGTTGCAACCTCGTTCCTTTAACATTCAGAGGCAGGTTTCAGAAATTGAGGCAGCTCAGTGGATGCCAATTGGGGATTATGTAGCCCAGCCTTTTGTCCGAGAAAATGAGCTATTTGACTTTCTTTCAAAAATATGCTTATCAAAGTGGGATGGAAAATACTCTGGCTTTTCTACCCTACTTACTACTAGTACATCCTCTTGCAAGAAATCCTGTGTGTACTTCAACAAAAAGGATGCTGGCCATTTAAATTTCAACCTTACTTCCACACAGGCGCCTGAAATC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00620	4452	7723	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0016787 hydrolase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000620s00017778.1	PF00293.23	NUDIX	148	265	1.40E-22

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.099
SRR1783600	control	0.068
SRR1783602	moderate drought stress	0.163
SRR1811619	moderate drought stress	0.133

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.850
DRR006520	Root Summer glycyrrhizin high producing strain	0.981
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	1.380
DRR006524	Root Summer glycyrrhizin low producing strain	1.246
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.127
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.097

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.631
SRR2868004	Drought Stress (root)	1.283
SRR2967015	Control (root)	0.800

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.108
SRR9715740	Leaf	1.903
SRR9715741	Leaf	4.767
SRR9715739	Root	1.721
SRR9715742	Root	0.569
SRR9715743	Root	1.572

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.830
SRR8749028	MeJA induced 9h	5.412
SRR8749029	MeJA induced 9h	5.024
SRR8749030	Uninduced	33.702
SRR8749031	Uninduced	6.901
SRR8749032	Uninduced	3.141

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.075
SRR8400027	Control - Root	0.850