Gene detail information of Glyur000619s00033292 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G29700.1 | 8.00E-116 | Metallo-hydrolase/oxidoreductase superfamily protein |
| NR | XP_007153351.1 | 0 | hypothetical protein PHAVU_003G028100g [Phaseolus vulgaris] |
| COG | YP_007081533.1 | 3.00E-42 | Zn-dependent hydrolase [Pleurocapsa sp. PCC 7327] |
| trEMBL | tr|V7C7U6|V7C7U6_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW25345.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00619 | 92178 | 96364 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000619s00033292.1 | PF13483.1 | Lactamase_B_3 | 77 | 281 | 3.60E-38 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.644 |
| SRR1783600 | control | 5.519 |
| SRR1783602 | moderate drought stress | 6.237 |
| SRR1811619 | moderate drought stress | 5.944 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 13.735 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 13.702 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.272 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.346 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 11.058 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 11.038 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 53.206 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 52.524 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.993 |
| SRR2868004 | Drought Stress (root) | 2.778 |
| SRR2967015 | Control (root) | 2.437 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 23.382 |
| SRR9715740 | Leaf | 40.265 |
| SRR9715741 | Leaf | 19.662 |
| SRR9715739 | Root | 3.499 |
| SRR9715742 | Root | 4.999 |
| SRR9715743 | Root | 4.116 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.259 |
| SRR8749028 | MeJA induced 9h | 3.194 |
| SRR8749029 | MeJA induced 9h | 5.732 |
| SRR8749030 | Uninduced | 1.578 |
| SRR8749031 | Uninduced | 0.756 |
| SRR8749032 | Uninduced | 2.363 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 10.078 |
| SRR8400027 | Control - Root | 10.954 |