Gene detail

Gene detail information of Glyur000618s00030223

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G28850.1	6.00E-88	Glutaredoxin family protein
NR	XP_007139585.1	0	hypothetical protein PHAVU_008G042000g [Phaseolus vulgaris]
Swissprot	tr\|Q9FLE8\|Y5986_ARATH	4.00E-131	Uncharacterized protein At5g39865
trEMBL	tr\|V7B168\|V7B168_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW11579.1}

Sequence

Transcript Sequence

>Glyur000618s00030223.1
ATGGGTTGTGCTAATTCCAAGCAAAAGCGATGTCGGCATTGCAACGCTCCTTACTCCCCTGTTCCGAGAAGCTACTCAATGCACGTTCATCACCCACCCCAAACCGAAGGGGACAGCTACCATGTCGTGGCACTCACCTCCACCACACTGGGCACTCTCAAACTCAATAATTCCCCTGCTCCAAATCACCGAAACAACATTGCTCCAAACGGGGTCCATAGTTTCAAGGTCGAAGACAACCACAGCTTCAGGTTTGATAATGGCACCTTAATGCAAAAACTCAAGAAGGAGAAGGAGAAGGAGAAGGAAAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGGGTGAAGAAGCATTGGAGAATGAGAAAATAAAGGAGTTTTCGATGGGGTTGATTGAGGCCAAGACTTGGTCCAATATGATTGAGCAAAAGTTAACAAAAGTTGTTCCCAAGACACCAATTAGAACACCACCTGGTGAACCAGAAACAATCAACACATGGGAACTAATGGAAGGCCTTGAAGATACTACCCCTTTACGATCACCAAATCACTTCCGGAGTTTCTCTTTCGATGTCAATGGTAATGGTGATGATGATGATGATGTTGATGTTGATGTTGATTTTGATCCACCCAAATCGAGCTTCACTGCTTCTTCTCCAAAACCACCCATGTGGCTTCAGATGACAGATGAAGAATCAAAACTCAACCCTTCAATCTCAGATTTTGATCCTGAAGTGATTTCCTCATTCAGAAAAACCTTACAACAGCTCTCTCCAGATAACCCCTTTCACCTTCGACCAGCGCCAACCGATCATGAAGACATACAATTACAAGGGACTAAAAAAGGTGATGTTGTTGATGTTATGGATGATGATGATGATGATAGAATTAGGCTTGGTGGGAAGGACAAGGTGGTGTTGTATTTCACAAGCCTACGTGGGGTGAGAAAGACTTATGAGAATTGTTGCCAGGTGAGGATGATTCTGAAAGGGTTGGGAGTGAGGGTGGATGAGAGAGATGTGTCCATGCATTCAGGGTTCAAGGAGGAGCTAAGAGAGCTTCTGGGTGGTGGTGATGGGGTTGGAATTGGATTAGGATTGCCAAGGGTGTTTGTTGGGAGGGATTACATTGGTGGGGCTGAGGAAATTCAGAGGCTGCATGAGGATGGGAAGCTTGAGAAATTGTTGGGGTGTTGTGAGAAGATTGAGGAGAATTGTGGTGGTGATGGTGTTGGGGGAGCATATTGTGAGGCCTGTGGGGATATAAGGTTTGTTCCTTGTGAAACCTGTTCTGGAAGCTGTAAAATCTACTATGAAGTCGATGAAGAAGAAGAAGAAGAAGAAGAATATGATGATGGTGGTGGTGGTGAGGTGGGTGAGTATGGATTCCAGCGTTGCCCTGATTGCAATGAAAATGGACTAATTCGTTGCCCCATGTGCTGCTACTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00618	118644	120101	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0045454 cell redox homeostasis

molecular_function

GO:0009055 electron carrier activity

GO:0015035 protein disulfide oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000618s00030223.1	PF00462.19	Glutaredoxin	309	380	1.20E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.738
SRR1783600	control	5.625
SRR1783602	moderate drought stress	2.471
SRR1811619	moderate drought stress	2.486

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	14.068
DRR006520	Root Summer glycyrrhizin high producing strain	13.472
DRR006521	Root Winter glycyrrhizin high producing strain	3.397
DRR006522	Root Winter glycyrrhizin high producing strain	3.378
DRR006523	Root Summer glycyrrhizin low producing strain	32.225
DRR006524	Root Summer glycyrrhizin low producing strain	28.045
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.148
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.098

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.441
SRR2868004	Drought Stress (root)	6.474
SRR2967015	Control (root)	8.851

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	33.434
SRR9715740	Leaf	24.582
SRR9715741	Leaf	42.844
SRR9715739	Root	10.176
SRR9715742	Root	57.250
SRR9715743	Root	43.618

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.754
SRR8749028	MeJA induced 9h	9.538
SRR8749029	MeJA induced 9h	6.603
SRR8749030	Uninduced	28.617
SRR8749031	Uninduced	15.391
SRR8749032	Uninduced	12.938

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.170
SRR8400027	Control - Root	17.608