Gene detail information of Glyur000618s00030218 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G26880.1 | 2.00E-47 | Ribosomal protein L34e superfamily protein |
| NR | NP_001236831.1 | 2.50E-79 | uncharacterized protein LOC100305798 [Glycine max] |
| COG | YP_004781793.1 | 3.00E-07 | 50S ribosomal protein L34e [Pyrolobus fumarii 1A] |
| Swissprot | tr|P40590|RL34_PEA | 1.00E-77 | 60S ribosomal protein L34 |
| trEMBL | tr|C6SWN5|C6SWN5_SOYBN | 9.00E-80 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA09G37360.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00618 | 92973 | 94948 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000618s00030218.1 | PF01199.13 | Ribosomal_L34e | 1 | 96 | 2.20E-35 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 43.802 |
| SRR1783600 | control | 45.461 |
| SRR1783602 | moderate drought stress | 28.905 |
| SRR1811619 | moderate drought stress | 28.369 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 68.122 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 76.335 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 43.022 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 40.472 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 57.550 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 58.055 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 31.249 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 34.313 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 85.235 |
| SRR2868004 | Drought Stress (root) | 54.804 |
| SRR2967015 | Control (root) | 51.061 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 52.540 |
| SRR9715740 | Leaf | 58.865 |
| SRR9715741 | Leaf | 58.080 |
| SRR9715739 | Root | 12.383 |
| SRR9715742 | Root | 32.107 |
| SRR9715743 | Root | 25.217 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 251.514 |
| SRR8749028 | MeJA induced 9h | 104.582 |
| SRR8749029 | MeJA induced 9h | 175.566 |
| SRR8749030 | Uninduced | 21.497 |
| SRR8749031 | Uninduced | 9.565 |
| SRR8749032 | Uninduced | 16.775 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 97.405 |
| SRR8400027 | Control - Root | 89.655 |