Gene detail

Gene detail information of Glyur000618s00030216

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G39785.1	2.00E-111	Protein of unknown function (DUF1666)
NR	XP_003551731.1	0	PREDICTED: uncharacterized protein LOC100785051 isoform X1 [Glycine max]
trEMBL	tr\|K7MUS9\|K7MUS9_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA18G49350.2}

Sequence

Transcript Sequence

>Glyur000618s00030216.1
ATGGTTCTAAGCAACCGAAAGATTAGCTCAAAACACAAGTCGCTGACATGTAACACTTCAACTTCTGCTGAATCGGACTCACCATGTGAAACCCCTTTGAGGGGTGTGATGGATCTTTTCTCTGGTTACTTTTGGGTCTTTCTCTCTAAGCTTATCCAAACTCTGTTCTGGGTTTTCACCAAAGTCTTCATGAGATTCTATAGTCCTGAAGCAACAATGAACNCAATTTGTTCTTCTAAATTTTTACATGAAAATCCTCAAATTGAGTTAAATCATTGTGAGTCAAATTCTGAGGCCGGAGCAGGAATTTCTGAGTCTTTTGGAGAAACCGAGGTGGGGTCTGAAAATTTTGGGGCAGTTGCTGATACTCTCTCACATGAAAGCAATCAAATTGAGTCTAATGGTAGCGTCAGCGAACCAGAAACAGAACCCATTTCTGAAACTGTTGATCATGGTGGGAATTTTGACCTTGAAGAAGAGGAGAAATCAAAGTTGGTTTTCAAATTCCAATACCAAAGCTGGAATTGCAACTATAGTGAAGAATCCAAGGGAAGCCACGGTGAAAGTAGTGACTTTGAGAAGAGGGATACAGTTTCTGCAAGCACCAACAAGTATGAGTTCATCTCAGGCAAGAGTTTCAGCCAATTCTTAGATGAACCGGAGGCTGCAAATTTCACTGTNAGAGAGTTTTTCGTTCGCTCAAATGATCATTTTCCATTGGAAAATCAGGTGAAATTCGTGCCAGAAAATTGTGAAGGGGTTGTCAATGCTGAAATTCTTGATAATTTCCCAGAAAATGTGCACAAAGAGGAGGTGTCAGAGAAGCTCAAAGCTGTTCTATCTATTGGACAAAAACCTTTGGAACCAGTTGCACGTAATTTCCTTTCTGATGATGATTTCATTTGTTCAAGCTCTGACTCAGATTCTATCAGTTCTCTGGATGATGATGGTTTTCTGTCAGACACAGACTTTGGAACCACTACTGAGCTTGACACATTGGCAAACAATGAAGAAGAAGAAGAAGATGATGATTTGGACTTTGGGGATGGGAAAAACTCTGAGAGTTTTGATTTTGGCTATGAGCCTGATGATTTTGCTGAAGAAGATGAAGACATAATGGATGACCTTGGAAAATTGGAAAGAGAGTCTATGCTGCAGAAGTCNTCAGATAGCACCAATACCAAACCTGAACAATCTGTGAAGCCCAATTCACAGAGTTTAACAGCTTTTGATGCNGAGGATTCCAACCGGTTTGACACACTTTGGGAACATCAAGATTTGATAGAACAGTTGAAGATGGAACTGAAGAAGGTCAGGGCCACTGGTTTACCTACCATCCTTGAGGATTCTGAGTCTCCAAGGATAGTGGAAGACTTGAAGCCATGGAAAATTGATGAGAAGTTCCAGCATGGTAGTAGTACCACAAATGAGCTTCCAAAATTCTACAAGAGTTACAGGGAACGAATGAGGAAATTTGATATCCTGAATTACCAAAAGATGTATGCTTTACGTTTTCTGCAGTCAAAGGACCCACTCCTCAAGTCATTTTCAAGCCATAAGAACGCTTCTCCAGCAATCACATGCATTCTCCCACGCGGCTTTCGCCTCTTCAGGCGTAAAAACACTGAGGCATCTGACCCAATGAACAAGTTCATAAGGGAATTATACAGCGACTTGGAAATGGTTTATGTGGGACAGTTGTGCCTTTCTTGGGAATTCCTTCAGTGGGAATATGAGAAGGCACTGAAGTTGTGGGAATCTGACCAGTATGGATTGCGGAGGTTCAATGAAGTAGCTGGAGAGTTTCAACAATTCCAAGTGCTTCTCCAAAGATTCATAGAGAATGAACCTTTCCAAGGTCCACGGGTTGAAAACTATGCCAGGAATCAAGACAACGCCAAGGANAAAAAGAAGTTCAAAAAAAGAGAAGCTGACAACAACGATGATGCCATCACAAGTGACATGCTAGTAGAGATTTTGGAAGAATCAATAAGAACAATTTGGCGTTTTATAAGAGCCGATAAAGAGGCATCTAACTTGACAGTTAAAGGACTAAGAGGAGAACATCAAGTGGAGCTCCAAGACCCTGCAGATTCACAGCTTCTAGTGGAGATTCGAACAGATCTTCAAAAGAAGGAAAAGAGACTGAGAGACCTTTTGAGGAGTGGATGCTGCATATTGAAGAAGTTCCAAAAGCATCATCATGAAGATGGGGCGGANCCAGTGCTTTACTTTTTCTCACAAGTGGATATGAAATTGGTNTGGAGAGTGTTGAACATGTCAAGGATAACGACGGATCAACTAGCATGGTGTTGTAGCAAATTAAACAAGATCAGTTTTGTAAACCGAAGGATACATGTAGAACCATCATTCTTACTTTTTCCTAGTTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00618	87447	92167	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006412 translation

cellular_component

GO:0005622 intracellular

GO:0005840 ribosome

molecular_function
GO:0003735 structural constituent of ribosome

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000618s00030216.1	PF07891.7	DUF1666	556	795	6.30E-93
Glyur000618s00030216.2	PF07891.7	DUF1666	484	723	5.50E-93

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.287
SRR1783600	control	5.186
SRR1783602	moderate drought stress	2.312
SRR1811619	moderate drought stress	2.305

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.860
DRR006520	Root Summer glycyrrhizin high producing strain	11.769
DRR006521	Root Winter glycyrrhizin high producing strain	8.211
DRR006522	Root Winter glycyrrhizin high producing strain	8.248
DRR006523	Root Summer glycyrrhizin low producing strain	18.327
DRR006524	Root Summer glycyrrhizin low producing strain	18.577
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.038
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.006

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.017
SRR2868004	Drought Stress (root)	12.665
SRR2967015	Control (root)	10.128

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	63.757
SRR9715740	Leaf	56.687
SRR9715741	Leaf	82.047
SRR9715739	Root	2.388
SRR9715742	Root	26.314
SRR9715743	Root	22.577

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.842
SRR8749028	MeJA induced 9h	3.077
SRR8749029	MeJA induced 9h	1.332
SRR8749030	Uninduced	3.768
SRR8749031	Uninduced	15.089
SRR8749032	Uninduced	7.242

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	13.433
SRR8400027	Control - Root	20.501