Gene detail

Gene detail information of Glyur000618s00030214.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G28910.1	3.00E-79	myb domain protein 30
NR	ABD32205.1	4.47E-149	Homeodomain-related [Medicago truncatula]
Swissprot	tr\|P81392\|MYB06_ANTMA	3.00E-98	Myb-related protein 306
trEMBL	tr\|Q2HVT2\|Q2HVT2_MEDTR	2.00E-149	R2R3-myb transcription factor {ECO:0000313\|EMBL:AES77404.2}

Sequence

Transcript Sequence

>Glyur000618s00030214.1
TTCTTTTTTTAGCTATATATGTACACCAAGCAAAGGTTAGGCTGGACACTTGCCTTACAATTCCTACCTATTAAGTCTCAAGATAGAGAAATAAAAAAGAGAAGAGAANATATCACAGAGAGAGTACTGGAAGAAGACCTAGCTAGCTATATTTTCCCTGAACATCACAAGGGGGATTATAGAAAAATTAGAAAACACAAGTCGGTGTGTGTGAAATAATATAAAGCAGCAAAAGAGAAACAAGGAGACATGGGAAGGCCACCTTGTTGTGACAAAGAAGGTGTGAAGAAAGGGCCTTGGACTCCTGAAGAAGATATCATATTGGTCACTTATATACAGGAACATGGTCCTGGCAATTGGAGGGCTGTTCCCACCAAGACAGGGTTGTCAAGATGCAGCAAGAGTTGCAGGCTTAGATGGACTAATTACCTGAGGCCAGGAATCAAAAGGGGTAACTTCACTGAACAAGAGGAGAAGATGATAATCCATCTTCAAGATCTTTTAGGAAACAGATGGGCTGCCATAGCTTCATACCTTCCACAGAGAACAGATAATGACATAAAGAACTATTGGAACACCCATTTGAAAAAGAAGCTCAAGAAATTGCAAGCAGGAGGTAGTAGTTCTGAAGCAAGTTTGGGGGAAGGGTTTTCAGCATCACAGAGGATTCCCAGAGGCCAGTGGGAAAGGAGGCTCCAAACAGACATCCAAATGGCCAAAAAAGCTCTCAGTGAAGCTCTTTCACCAGAGAATAAACCATCTTCTACTTTCTCTGCATCATCAATATCAAACCCTTCCAACAAAAATAGTACTACTTGCTCTTTCTCTTCCAACAGTGCTACTAAACAACCCCAATCTTCTTGCTATGCCTCAAGTGCAGACAACATAGCTCGTTTGCTGAAAGGGTGGATGAAGAATAACCCACCAAAGCTATTCTCTCGAACAAACTCAGCTGTGACCCAAAACTCAATCTTTAACAANTTGGGGACTGATACTGCATCTAGTGATGAAGGAAGCCCAAGTGGGGCATTAAAGGGAGGTGCTGCTGAAGTATTGTCTGAGACGTTTGAATCCTTGTTTGGTTTTGAGTACTCTTTGGATCAGTCTAATTCAAATTCTGATCAGTTTTCACAGTCTCTGTCCCCTGAGGCTAGTACTACTGTTTTACAAGATGAAAGCAAGCCTGATATTAATATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00618	73878	75453	-

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003677 DNA binding

GO:0003682 chromatin binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000618s00030214.1	PF00249.26	Myb_DNA-binding	14	61	3.10E-15
Glyur000618s00030214.1	PF00249.26	Myb_DNA-binding	67	112	4.50E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.000
SRR1783602	moderate drought stress	0.875
SRR1811619	moderate drought stress	0.922

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.717
DRR006520	Root Summer glycyrrhizin high producing strain	2.488
DRR006521	Root Winter glycyrrhizin high producing strain	0.279
DRR006522	Root Winter glycyrrhizin high producing strain	0.220
DRR006523	Root Summer glycyrrhizin low producing strain	1.106
DRR006524	Root Summer glycyrrhizin low producing strain	1.108
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.664
DRR006526	Leaf Summer glycyrrhizin high producing strain	11.422

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.555
SRR2868004	Drought Stress (root)	1.049
SRR2967015	Control (root)	2.776

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	85.637
SRR9715740	Leaf	49.472
SRR9715741	Leaf	91.489
SRR9715739	Root	0.000
SRR9715742	Root	0.491
SRR9715743	Root	0.363

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	44.565
SRR8749028	MeJA induced 9h	28.868
SRR8749029	MeJA induced 9h	24.217
SRR8749030	Uninduced	40.490
SRR8749031	Uninduced	4.286
SRR8749032	Uninduced	9.489

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.379
SRR8400027	Control - Root	1.385