Gene detail information of Glyur000618s00030211 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G15230.1 | 1.00E-33 | GAST1 protein homolog 4 |
| NR | XP_003621217.1 | 3.70E-64 | Gibberellin-regulated protein [Medicago truncatula] |
| Swissprot | tr|P46690|GASA4_ARATH | 2.00E-46 | Gibberellin-regulated protein 4 (Precursor) |
| trEMBL | tr|G7L0Z5|G7L0Z5_MEDTR | 1.00E-64 | Uncharacterized protein {ECO:0000313|EMBL:AFK44961.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00618 | 19430 | 20823 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000618s00030211.1 | PF02704.9 | GASA | 48 | 107 | 1.60E-26 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.753 |
| SRR1783600 | control | 4.659 |
| SRR1783602 | moderate drought stress | 25.310 |
| SRR1811619 | moderate drought stress | 25.086 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 24.765 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 23.963 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.701 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.690 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 19.687 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 19.726 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.943 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.140 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 145.878 |
| SRR2868004 | Drought Stress (root) | 58.437 |
| SRR2967015 | Control (root) | 77.419 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 13.626 |
| SRR9715740 | Leaf | 1.025 |
| SRR9715741 | Leaf | 4.525 |
| SRR9715739 | Root | 108.777 |
| SRR9715742 | Root | 10.653 |
| SRR9715743 | Root | 29.250 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 35.820 |
| SRR8749028 | MeJA induced 9h | 0.430 |
| SRR8749029 | MeJA induced 9h | 3.534 |
| SRR8749030 | Uninduced | 0.204 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 3.970 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 38.687 |
| SRR8400027 | Control - Root | 53.662 |