Gene detail information of Glyur000618s00030209 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G80760.1 | 3.00E-21 | NOD26-like intrinsic protein 6;1 |
| NR | NP_001266068.1 | 9.76E-97 | aquaporin NIP2-1-like [Cicer arietinum] |
| COG | YP_005009762.1 | 2.00E-25 | MIP family channel protein [Niastella koreensis GR20-10] |
| Swissprot | tr|Q19KC1|NIP21_MAIZE | 2.00E-55 | Aquaporin NIP2-1 |
| trEMBL | tr|Q6KAW0|Q6KAW0_CICAR | 4.00E-97 | Nod26-like major intrinsic protein {ECO:0000313|EMBL:CAG34223.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00618 | 1435 | 7511 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000618s00030209.1 | PF00230.15 | MIP | 89 | 200 | 2.20E-22 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.737 |
| SRR1783600 | control | 0.595 |
| SRR1783602 | moderate drought stress | 0.055 |
| SRR1811619 | moderate drought stress | 0.081 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 19.845 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 20.429 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.702 |
| SRR2868004 | Drought Stress (root) | 2.771 |
| SRR2967015 | Control (root) | 0.630 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 36.499 |
| SRR9715740 | Leaf | 33.200 |
| SRR9715741 | Leaf | 36.655 |
| SRR9715739 | Root | 0.090 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.005 |
| SRR8749030 | Uninduced | 0.078 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.925 |
| SRR8400027 | Control - Root | 0.767 |