Gene detail information of Glyur000617s00023879 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G38070.1 | 2.00E-13 | RING/FYVE/PHD zinc finger superfamily protein |
| NR | KHN13917.1 | 1.99E-64 | E3 ubiquitin-protein ligase MARCH1 [Glycine soja] |
| trEMBL | tr|I3SA13|I3SA13_LOTJA | 2.00E-63 | Uncharacterized protein {ECO:0000313|EMBL:AFK37105.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00617 | 100311 | 102602 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000617s00023879.1 | PF12428.3 | DUF3675 | 57 | 160 | 6.70E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.671 |
| SRR1783600 | control | 0.443 |
| SRR1783602 | moderate drought stress | 0.667 |
| SRR1811619 | moderate drought stress | 0.711 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.740 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.605 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.282 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.453 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.020 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.961 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.905 |
| SRR2868004 | Drought Stress (root) | 4.684 |
| SRR2967015 | Control (root) | 3.488 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.124 |
| SRR9715740 | Leaf | 0.192 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.203 |
| SRR9715742 | Root | 0.909 |
| SRR9715743 | Root | 0.468 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.066 |
| SRR8749031 | Uninduced | 0.012 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.714 |
| SRR8400027 | Control - Root | 1.817 |