Gene detail

Gene detail information of Glyur000617s00023868

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G15160.1	3.00E-35	MATE efflux family protein
NR	KHN47245.1	1.20E-88	MATE efflux family protein DTX1 [Glycine soja]
Swissprot	tr\|Q8RWF5\|MATE9_ARATH	5.00E-34	MATE efflux family protein 9
trEMBL	tr\|G7KV90\|G7KV90_MEDTR	3.00E-77	MATE efflux family protein {ECO:0000256\|RuleBase:RU004914}

Sequence

Transcript Sequence

>Glyur000617s00023868.1
GTTACAAAAGAGGACAAAGGTGGAGCCAGACAGCGATAATTTATTTTATATATAGAATAAAGATTTTATATATATAGAATAAAGAAAATAAAATATGCCACTTAGTTAAGTGAGTTGATATTATAAATTGATCATGGCAAAGTGATTAATTAGAAGGGCGCTCGCTAGGTGCAGCCATGGATCAAGAAGGTGGTTCAGAGAGGGGAAATAAGTGGGGATGGATGAAAACTAGGAGAGCGTTTATGGCGGAACTGAAGAAGGTGGGAGTTATAGCGGCGCCGATGGTGGTGACCACTGTGCTGCAATATCTTCTACAAGTCGTATCGGTTATTATGGTTGGCCATCTTAACCCGCTCTCGCTTGCAAGTGTTGCTATTGCAACATCNCTCACCAATGTTTCTGGCTTTAGTGTCTTAACACAAAGTTTAATTTCTCCAATGATTATAAGCTCCTTTCTAGTCATGTGCTTCCAAGTAGTAACTTGTTGGGCACTAGTATATAAATTGGAGCTGGGACATGTTGGTGCTGCAATTGCCTTAAGCCTATGCACTTGGTTGAATGTGATCATGCTCTTGTCCTTTGTGAAGTTTTCCTCTGCTTGTGANAAAACTCGTACCCCATTTTCCAAGAGGGCATTCCATGGTATTGGACACACAAGAGTTTCGAATGAATTAGGAGCTGGGAATCCAAAAGCAGTTCGTGTGGCTGTTTCTGCAGCGATGTTCCTTGCATTTGCAGAGGCCCTGATTGTAACCGCAACCCTGTTTGGCTGCAGACATGTNTTAGGTTATGCCTATAGCAACGATGGTGTGGTTGTTCATTACGTGGCTGTTATGACCCCTCTCCTATGTGTCTCCATTTTTACGGACAGCTTGCAAGCAGTTCTTTCAGGGGTAGCTAGAGGAAGTGGGTGGCAACATCTTGGAGCCTATGTCAATCTTGGAGCGTTTTATCTGGTGAACGGTGAATCACTTGAAAAGCACTCACCAACCAACAATCAGGACCTAATCCTCCCCGAATCAGAGAGATCATTGAAGTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00617	8188	21006	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006855 drug transmembrane transport

GO:0055085 transmembrane transport

cellular_component
GO:0016020 membrane

molecular_function

GO:0015238 drug transmembrane transporter activity

GO:0015297 antiporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000617s00023868.1	PF01554.13	MatE	87	262	5.70E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	28.566
SRR1783600	control	29.654
SRR1783602	moderate drought stress	31.712
SRR1811619	moderate drought stress	30.316

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	35.278
DRR006520	Root Summer glycyrrhizin high producing strain	36.036
DRR006521	Root Winter glycyrrhizin high producing strain	5.528
DRR006522	Root Winter glycyrrhizin high producing strain	5.790
DRR006523	Root Summer glycyrrhizin low producing strain	50.203
DRR006524	Root Summer glycyrrhizin low producing strain	52.772
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.022
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.929

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	23.145
SRR2868004	Drought Stress (root)	35.784
SRR2967015	Control (root)	58.952

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.639
SRR9715740	Leaf	0.188
SRR9715741	Leaf	0.380
SRR9715739	Root	13.072
SRR9715742	Root	11.839
SRR9715743	Root	12.149

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.740
SRR8749028	MeJA induced 9h	2.069
SRR8749029	MeJA induced 9h	0.618
SRR8749030	Uninduced	0.599
SRR8749031	Uninduced	0.173
SRR8749032	Uninduced	1.617

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	29.289
SRR8400027	Control - Root	38.731