Gene detail information of Glyur000616s00026610 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G53460.3 | 0 | NADH-dependent glutamate synthase 1 |
| NR | KEH40309.1 | 0 | NADH glutamate synthase [Medicago truncatula] |
| COG | YP_003368755.1 | 0 | glutamate synthase (NADH) [Pirellula staleyi DSM 6068] |
| Swissprot | tr|Q03460|GLSN_MEDSA | 0 | Glutamate synthase [NADH], amyloplastic (Precursor) |
| trEMBL | tr|A0A072VE66|A0A072VE66_MEDTR | 0 | NADH glutamate synthase {ECO:0000313|EMBL:KEH40309.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00616 | 122700 | 134625 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K00264 | GLT1 | EC:1.4.1.13 1.4.1.14 | Biosynthesis of amino acids | map01230 |
| Nitrogen metabolism | map00910 | |||
| Alanine, aspartate and glutamate metabolism | map00250 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000616s00026610.1 | PF00310.16 | GATase_2 | 108 | 321 | 6.80E-67 |
| Glyur000616s00026610.1 | PF00310.16 | GATase_2 | 335 | 506 | 1.40E-68 |
| Glyur000616s00026610.1 | PF04898.9 | Glu_syn_central | 607 | 895 | 9.20E-120 |
| Glyur000616s00026610.1 | PF01645.12 | Glu_synthase | 960 | 1331 | 4.40E-161 |
| Glyur000616s00026610.1 | PF01493.14 | GXGXG | 1412 | 1601 | 2.20E-69 |
| Glyur000616s00026610.1 | PF14691.1 | Fer4_20 | 1736 | 1844 | 1.70E-22 |
| Glyur000616s00026610.1 | PF07992.9 | Pyr_redox_2 | 1858 | 2171 | 1.80E-17 |
| Glyur000616s00026610.1 | PF00070.22 | Pyr_redox | 1858 | 1899 | 0.00013 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 11.522 |
| SRR1783600 | control | 11.513 |
| SRR1783602 | moderate drought stress | 13.764 |
| SRR1811619 | moderate drought stress | 13.730 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 12.860 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 12.758 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 39.770 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 38.751 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 19.376 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 19.420 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 13.885 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 14.003 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 113.319 |
| SRR2868004 | Drought Stress (root) | 97.003 |
| SRR2967015 | Control (root) | 105.364 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 18.055 |
| SRR9715740 | Leaf | 16.177 |
| SRR9715741 | Leaf | 12.840 |
| SRR9715739 | Root | 11.058 |
| SRR9715742 | Root | 81.743 |
| SRR9715743 | Root | 68.705 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 137.118 |
| SRR8749028 | MeJA induced 9h | 330.400 |
| SRR8749029 | MeJA induced 9h | 296.756 |
| SRR8749030 | Uninduced | 288.885 |
| SRR8749031 | Uninduced | 232.628 |
| SRR8749032 | Uninduced | 355.359 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 86.220 |
| SRR8400027 | Control - Root | 42.604 |