Gene detail

Gene detail information of Glyur000616s00026608.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G18250.1	4.00E-21	receptor serine/threonine kinase, putative
NR	KHN05167.1	3.83E-174	Putative receptor-like protein kinase [Glycine soja]
Swissprot	tr\|Q9FID5\|Y5393_ARATH	4.00E-29	Probable receptor-like protein kinase At5g39030 (Precursor)
trEMBL	tr\|V7CTJ3\|V7CTJ3_PHAVU	6.00E-158	Uncharacterized protein {ECO:0000313\|EMBL:ESW33507.1}

Sequence

Transcript Sequence

>Glyur000616s00026608.1
ATGTGGCGGGTGGAAGCGATATTATTGGTGGTCTTGCTGTTCACGCTTCTACTGCGACGAGGTGGCAGTAGTAGGGGTGAGCAAGATGATGCCTGTCCCGCTTCTTCCTGTGGCAAAATCTCAAACATAAGCTATCCATTCCGGTTAAAAGATGACCCGGAACGGTGCGGGGACAGCAGGTATGAACTGGCTTGTGAAAACAATGCGACAACCTTGTATCTGTACTCGGGAAAGTATGAGGTGCAGTCCATCAACTACAAGAATTTCACAATCCGAGTGGTTGACCCCGGAGTGGTTCAACTTCAACCAGCTAATTATAATTGCTCCTCCTTTCCTCGCTATTCCCTCTCTCGATCTGATTTTTGTGATACTTATGATTATTACAACAACAATTGCACGGATCCATACCATGCCCTTGCTGATCACCGAATTTTCGTTTCTCACGAGCTTCTTTTTCAGCATGTGGTTTACTTGAACTGTACCCATCCGGTGACTAACAATCCTAAATATGTGGATACTGCTTCCTGCCTCAATTGGCACCGCGAAGGCTATATCTACGCTATCGCCAGTGACTTAATGGCTGAGGACTTTCAAGTGGGTTGCCATGTGAAGCTGGTTTCTCCCACGTCTTGGTGGGGTTTGCACACAAATGAAACTTCCTACGCAGTCATTCACAGGGCGTTAGTCTATGGTTTTGAGATTTCATGGTTGCATCTTCCCTGTCAGGATCTTTGTGGAGATCCAGAATCCTGCTTCTTCGACTCTTCCCGCGAGGAACTTCGTTGCAGTCACTACTGCCGTAGACTGGTCGAAATAATAAAAGGACGAAACACAAAATATGAAGGTGATTCCTACTACAAAACAGGATTGGCCACGGGACACTATGTTCTACCATCATTTTGGGCAGCCAGATATCTATTGGGGTTGACATTATTGATTGCGCTTTTGATACACAAATGGCGAAAAAGACATTTATCAATGTATGGAAGTATTGAAACATATCTACAACAGAACAACTTGATGCCCATCGGATACTCGTACAGTGAAATTAAGAAAATGGCAAAAGGTTTCAAAGACAAGTTGGGTGAAGGAGGCTTTGGCTGTGTGTTCAAGGGGAACCTTCGTAGTGGGCCTTGTGTGGCAATTAAGATGTTGGGTAAATCAAAAGGTAACGGGCAAGACTTTATTAGTGAAGTAGCGACCATTGGAAGGATACATCATTTGAATGTGAATATTGGGGGAGTATCATATAAGGCTGATGTTTATAGCTTTGGGATGCTTTTGATGGAGATGGCAGGCAAGAGGAAAAACCTGAATCCCCATGTGGAGCATTCAAGCCAGCTTTACTTCCCCTTATGGATTTATGATCAACTTGGAAAAGAGGAAAGCATAGAAATGGAAGATGTCACAGAGGAGGAAAAAGAGATGGTAAAGAAGATGATCATAGTCGCGCTTTGGTGTATACAACTGAAACCAGATGATCGCCCCTCAATGAACAAAGTAGTGGAGATGCTTGAAGGAGATGTTGAAAGCCTTGAAATGNCTCCAAAGCCTTCTTTGTATCCACATGAAACGATTGCAGGGGATCAAGGAACCAACTCTGACCAAGCAATGTCGAGTCGTGACTTTATTAGTTCTTGTGATTCTGAGGAAATCACAACTAATCCTCTAGTAGAGAATATTGCTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00616	115297	119385	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.9.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0004713 protein tyrosine kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

GO:0030247 polysaccharide binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000616s00026608.1	PF13947.1	GUB_WAK_bind	31	97	6.50E-11
Glyur000616s00026608.1	PF07714.12	Pkinase_Tyr	357	410	5.50E-05
Glyur000616s00026608.1	PF07714.12	Pkinase_Tyr	415	505	1.80E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.358
SRR1783600	control	0.336
SRR1783602	moderate drought stress	0.360
SRR1811619	moderate drought stress	0.366

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.679
DRR006520	Root Summer glycyrrhizin high producing strain	0.362
DRR006521	Root Winter glycyrrhizin high producing strain	0.261
DRR006522	Root Winter glycyrrhizin high producing strain	0.356
DRR006523	Root Summer glycyrrhizin low producing strain	0.429
DRR006524	Root Summer glycyrrhizin low producing strain	0.426
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.578
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.476

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.538
SRR2868004	Drought Stress (root)	1.409
SRR2967015	Control (root)	0.761

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.777
SRR9715740	Leaf	0.701
SRR9715741	Leaf	0.486
SRR9715739	Root	1.758
SRR9715742	Root	0.203
SRR9715743	Root	0.493

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.046
SRR8749030	Uninduced	0.169
SRR8749031	Uninduced	0.059
SRR8749032	Uninduced	0.041

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.339
SRR8400027	Control - Root	0.399